Heatmap: Cluster_12 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
4h after treatment
4h after treatment,No nitrate
8h after treatment
8h after treatment,No nitrate
20C
20h after treatment
20h after treatment,No nitrate
20h after treatment,Nocodazole added
36h after treatment
36h after treatment,No phosphate
Blue light,10min after light change
Blue light,60min after light change
Bohlin
CCAP1055/1,20C
CCAP1055/1,20C,High CO2,OligoDT primed
CCAP1055/1,20C,Low CO2,OligoDT primed
CCAP1055/1,20C,Normal CO2,OligoDT primed
CCMP2561
CCMP2561 Nitrase Reductase Knockout
CCMP632
CCMP632,24h
CCMP632,48h
CCMP632,72h
CCMP632,High light acclimated WT
CCMP632,Low light acclimated WT
NEPCC640,8h,1000ppmv CO2
NEPCC640,8h,390 ppmv CO2
No light,8h after treatment
Pt-1
Pt-1 8.6
Pt-1 8.6,With nitrogen
Pt-1 8.6,Without nitrogen
Red light,0min before light change
UTEX 646,Blue light
UTEX 646,No light
-4.59 -3.93 -6.05 -5.11 0.97 -4.59 -5.06 -5.4 -3.97 -4.75 1.8 1.7 - 0.83 -3.89 -7.19 - -4.08 -5.23 2.04 -2.37 -0.38 1.5 -0.99 0.63 -3.04 -2.02 -4.41 -2.83 1.29 -2.08 2.76 1.82 -2.31 -1.52
-4.59 -3.93 -6.05 -5.11 0.97 -4.59 -5.06 -5.4 -3.97 -4.75 1.8 1.7 - 0.83 -3.89 -7.19 - -4.08 -5.23 2.04 -2.37 -0.38 1.5 -0.99 0.63 -3.04 -2.02 -4.41 -2.83 1.29 -2.08 2.76 1.82 -2.31 -1.52
-0.37 -0.02 -0.22 -0.19 -0.25 0.02 -0.14 -0.45 0.14 0.26 0.22 0.66 -1.47 -0.29 0.25 -0.08 0.46 -0.58 0.2 0.3 -0.03 0.89 0.14 -0.16 -1.73 -0.24 1.18 -0.03 -0.8 -0.83 -0.59 -1.42 0.78 0.01 0.12
-0.65 0.33 -0.21 1.17 0.3 -0.4 0.83 0.62 -0.49 -0.1 -0.1 0.14 0.16 1.2 -1.57 -0.73 -1.41 -0.2 -0.31 0.09 0.01 0.64 -0.16 -0.18 -1.61 -1.38 -2.78 -1.25 0.05 0.36 0.14 0.9 0.06 0.22 -1.26
-0.65 0.08 -0.52 0.06 -1.03 -0.3 0.48 -0.73 -0.16 0.32 -0.03 0.29 0.21 0.07 -0.83 -0.75 -0.86 -0.01 -0.14 -0.76 -0.63 0.32 -0.86 -0.25 -2.16 1.34 1.58 -0.56 -1.15 0.18 -0.66 0.62 0.35 0.39 0.57
-0.32 0.28 0.03 0.85 -0.3 -0.09 0.97 0.17 -0.18 0.14 0.33 0.89 -2.54 1.66 -1.67 -0.92 -1.32 0.03 0.14 -1.24 0.43 0.76 0.04 -0.84 -1.53 -1.5 -2.61 -1.08 -0.66 -0.15 -0.41 0.52 0.36 0.79 -1.38
-0.29 -0.1 -0.3 -0.19 -0.92 -0.21 0.32 -0.77 -0.01 0.18 0.32 0.9 -0.41 0.46 -0.01 -0.76 -0.58 0.49 0.52 -0.51 0.72 1.24 -0.3 -1.28 -3.41 -1.34 0.62 -0.07 -0.6 -1.02 -1.54 -0.07 0.75 1.14 -0.65
- - - - - - - - - - 0.2 0.73 - 2.08 - - - 0.06 -0.17 - - - - - - 0.23 0.1 - 4.54 - - - -1.13 - -
1.0 0.77 0.05 0.57 -0.33 1.15 0.88 -0.14 0.81 0.72 -0.18 0.26 -2.94 -1.49 -0.14 -1.08 -1.9 0.56 1.61 -2.7 0.48 1.01 -0.7 -2.55 -3.46 -2.52 -3.24 0.03 -1.92 -0.85 -2.03 0.31 -0.07 0.45 -1.0
0.64 0.91 0.25 0.62 0.27 0.18 0.4 -1.23 0.38 0.29 -1.02 -1.5 1.74 -4.78 -1.13 -0.92 -1.7 -0.29 -0.88 0.68 0.81 -0.2 0.41 -1.02 -0.75 -0.25 -1.66 1.62 0.25 -0.83 -0.44 -0.3 -1.28 -0.56 -3.43
-0.3 -0.04 -0.64 0.26 -0.42 -0.17 0.41 -0.89 0.44 0.1 -0.07 -0.17 -0.59 0.93 -1.6 -1.64 -2.33 -0.29 -0.48 -1.13 -0.96 -0.71 -0.78 -1.34 0.18 1.08 1.46 0.18 0.87 -0.21 -0.42 0.05 -0.12 1.1 0.52
0.23 0.32 -0.06 0.1 -0.09 0.3 0.34 -0.38 0.25 0.13 0.59 0.88 -1.4 0.3 -0.95 -0.74 -1.12 -0.08 0.0 -1.34 0.55 1.19 0.23 -0.43 -1.16 -1.67 -2.0 0.54 -1.35 -0.16 -0.58 0.18 0.62 0.43 0.12
-1.23 -0.6 -0.59 -0.02 -0.78 -0.16 -0.09 0.55 -0.11 0.07 -0.09 0.6 0.81 2.21 -1.35 -0.07 -1.18 0.14 0.2 1.07 -1.16 0.17 -1.22 -1.0 -2.45 -0.11 -1.79 -2.06 0.5 -0.61 -0.7 0.05 0.41 0.43 -0.15
-1.16 0.25 -1.17 0.09 -0.94 0.12 0.66 -0.54 0.49 0.46 0.56 0.83 -2.2 0.35 -0.68 -0.71 -1.29 0.03 0.1 -1.65 -0.9 0.56 -1.19 -0.23 -1.68 0.88 1.68 -1.41 -2.74 -1.22 -1.04 -1.74 0.9 1.0 1.08
-0.17 -0.19 -0.6 -0.45 0.4 0.25 0.24 -0.74 0.39 0.39 0.0 0.32 -1.51 0.99 -1.27 -1.95 -0.73 -0.31 -0.1 -0.56 0.16 0.53 0.18 -0.26 -1.45 -0.97 -0.97 0.25 -0.41 0.35 -0.26 0.74 0.34 0.66 1.12
-0.6 0.34 -1.17 0.07 -0.12 0.1 1.27 -0.38 0.63 0.42 -5.09 -5.15 2.73 -0.57 -9.4 -5.55 - -1.51 -3.41 1.17 0.3 0.2 -0.09 -0.25 -1.01 -2.79 -3.64 1.03 1.66 -0.07 -1.55 0.74 -4.96 -3.48 -1.85
-0.57 0.63 -0.91 0.5 -1.18 -0.44 1.6 -1.1 0.3 0.18 0.46 0.04 0.47 1.59 -1.69 -1.46 -2.05 -0.59 -0.26 -0.92 0.65 0.42 -0.18 -1.23 -2.46 -2.96 -4.06 0.93 -0.52 -0.43 -1.02 0.05 0.14 0.26 1.21
- - -0.82 -0.64 1.77 -2.39 -1.05 -2.26 0.27 0.46 1.94 1.47 - 2.32 - - - -0.62 0.45 -2.66 -2.39 0.46 - 1.08 - - - -0.81 2.06 -3.09 -1.65 - 1.89 - -0.85
0.67 0.63 0.21 0.37 0.24 0.9 0.67 -0.32 0.89 0.76 -0.03 0.03 -1.67 -1.04 0.0 -0.37 -0.24 -0.13 0.74 -0.38 -0.62 -0.1 -0.7 0.26 -1.59 -1.67 -2.22 0.14 -1.67 0.05 0.14 -0.06 0.38 0.11 -1.0
0.25 1.58 -0.43 0.83 -0.2 0.47 1.68 -0.3 0.28 0.43 -0.43 0.2 -2.38 -1.54 -1.02 -0.24 -0.31 0.27 1.29 -0.62 -2.39 -0.7 -1.8 -1.27 -2.16 -1.94 -1.62 1.04 -1.97 0.13 0.42 -0.03 -0.06 0.52 -2.83
0.03 0.45 -0.2 0.42 -0.2 0.17 0.5 -0.3 0.18 0.4 0.02 0.38 -0.21 0.67 -1.52 -0.76 -4.14 0.04 0.46 -0.35 -0.03 0.57 -0.72 -0.32 -1.81 -1.72 -1.97 -0.38 -0.44 -0.03 -0.62 0.41 0.29 1.19 1.06
-0.85 0.14 -1.45 -0.07 -0.35 -1.17 0.47 -0.85 -0.81 -0.55 0.34 0.73 0.1 1.53 -3.06 -1.26 -4.2 -1.17 -1.7 0.84 0.95 1.47 -0.06 -0.72 -2.61 -3.25 -2.16 0.25 -0.93 0.24 -0.43 1.19 0.92 -0.04 1.04
-0.15 0.32 -0.8 -0.0 -0.77 0.23 0.63 -0.77 0.16 0.25 0.86 1.33 -1.38 2.04 -1.48 -1.2 -1.96 0.08 0.56 -1.62 0.19 1.59 -0.28 -2.33 -3.74 -2.87 -3.53 -0.73 -1.92 -0.93 -1.35 -0.41 0.87 1.03 -1.25
-0.75 -0.86 -3.37 -0.44 1.66 0.33 -0.35 -0.16 0.5 0.36 1.26 1.35 -0.21 1.65 -0.7 -1.04 -1.08 0.63 0.58 -1.8 -0.52 0.69 -2.81 -2.7 -4.45 -0.2 0.18 -4.15 -5.46 -0.76 0.19 -1.17 1.57 -1.1 -5.27
0.2 0.03 -0.08 -0.48 0.38 0.2 -0.41 -0.97 -0.14 0.3 -0.65 -0.29 -0.8 0.1 0.14 -0.34 -0.39 0.12 1.1 0.42 0.14 0.93 -0.87 -0.54 -3.83 -0.36 -0.25 -0.55 -0.51 0.03 -0.62 -0.2 -0.31 1.36 0.8
-1.51 0.07 -1.33 0.53 -0.69 -0.7 0.59 -0.1 -0.52 -0.52 0.38 0.49 0.58 -0.3 -1.07 -1.21 -1.83 -0.33 0.22 -1.46 0.05 1.08 -1.67 -0.96 -1.87 1.31 1.46 -2.5 -2.41 -0.57 0.17 -0.75 0.89 0.79 1.23
- -2.5 -1.76 -0.47 0.68 -0.36 -0.79 - - -2.51 1.07 2.25 -0.55 - -2.19 - -1.58 0.01 -0.14 -0.52 0.38 -1.37 1.85 -1.53 -1.75 - - -2.64 0.94 -1.82 -1.92 - 1.83 2.0 1.94
1.02 2.13 0.39 1.56 -0.38 0.94 2.19 -0.34 0.31 1.35 -0.82 -0.94 0.22 1.15 -2.6 -2.92 -3.01 -1.1 -0.37 -4.65 -3.43 -1.11 -2.9 -5.02 - -2.64 -3.69 -0.78 -4.71 1.03 -0.8 0.19 -0.43 -3.18 -3.04
- - - - - - - - - - 1.01 - 4.21 -18.95 - - - - - 2.9 - - - - - - 2.68 - -0.8 - - - - - -
-1.45 -0.46 -0.8 -0.34 0.21 -0.9 -0.62 -1.08 -0.41 -0.02 0.81 1.55 1.07 1.81 -1.58 -1.13 -1.04 -1.4 -0.7 1.16 -1.9 -0.32 -1.43 -0.37 -0.56 -0.57 -2.28 -0.12 1.02 -1.36 -1.77 -0.92 1.27 0.09 0.83
-0.07 0.33 -0.09 0.2 -0.6 -0.04 0.58 0.81 0.4 0.53 0.78 1.09 -1.18 1.48 -2.39 -1.87 -2.34 -0.33 -0.04 -1.22 -0.2 1.48 -0.04 -1.36 -4.39 -3.78 -4.62 -0.6 -1.32 -0.89 -0.82 -0.67 1.14 1.0 -0.07
0.43 0.3 0.06 0.2 -0.03 0.29 0.28 0.04 0.4 1.1 0.8 1.2 -1.43 1.25 -1.56 -1.72 -1.72 -1.58 0.08 -2.45 0.29 1.46 -0.43 -1.58 -4.66 -3.26 -2.62 -0.71 -2.17 -0.79 -2.45 -1.58 1.09 1.26 0.25
0.59 0.75 0.61 0.95 -0.39 0.76 0.8 0.4 0.79 0.84 -0.29 -0.18 -1.64 -1.33 -0.55 -0.54 -0.48 0.06 0.53 -1.01 0.08 0.68 -0.2 -0.39 -3.05 -0.71 -0.68 -0.93 -1.48 -0.46 -0.48 -0.55 0.02 0.85 -1.57
-0.58 0.89 -0.2 0.81 -0.11 0.08 1.0 0.44 0.18 0.31 -0.37 -0.14 -0.25 1.7 -1.06 -0.59 -0.13 -0.06 -0.22 -0.54 -0.33 0.14 -0.57 -0.04 -1.36 -0.89 -1.27 -1.15 -0.38 -0.65 -0.31 -0.22 -0.3 0.8 -0.29
1.27 1.14 0.04 0.49 -1.24 1.34 1.21 -0.15 0.9 1.45 0.62 1.32 -1.41 1.08 -2.45 -1.79 -2.61 -0.72 0.5 -2.13 -0.66 0.65 -0.64 -3.27 -3.08 -5.04 -6.0 -0.11 -2.65 -2.87 -2.75 -2.43 0.7 0.28 -1.94
1.29 1.46 -0.0 0.69 -1.35 1.68 1.42 0.25 1.35 1.82 -0.55 -0.38 -2.07 -0.74 -1.98 -1.42 -1.81 -0.14 1.89 -2.91 -1.01 -0.07 -0.42 -4.9 -5.66 -3.65 -3.63 0.69 -3.03 -3.74 -3.43 -3.61 -0.23 -2.23 -1.95
0.0 -0.3 -1.91 1.72 - 0.22 1.01 0.12 0.67 - - - 3.83 - - - - 0.47 - -2.13 - - - - - 2.0 - 1.32 0.07 -1.12 -19.92 - - - -
-0.39 -0.16 -0.56 -0.42 0.14 -0.17 -0.4 -0.13 -0.16 -0.22 0.03 0.37 0.34 1.37 -1.11 -1.62 -0.88 -0.21 0.23 0.8 0.71 0.99 0.34 -0.54 -2.94 -1.26 -1.62 0.02 -0.44 -0.19 -1.2 0.18 0.17 0.83 0.73
-1.21 -0.06 -1.83 0.28 -0.76 -1.19 1.06 -1.0 -0.26 0.28 0.52 1.21 -0.59 0.57 -1.43 -1.41 -3.98 1.05 1.33 0.52 -0.47 0.28 -0.78 -1.36 -2.16 -2.1 -0.72 0.44 0.46 -0.4 -1.59 0.19 1.06 0.6 0.22
-0.62 0.81 -0.19 0.85 0.13 0.07 1.16 0.43 0.12 0.46 -0.46 -0.18 -1.59 1.73 -1.25 -0.86 -0.26 -0.27 0.11 -0.37 -0.44 0.27 -0.49 -0.48 -1.81 -0.83 -1.5 -0.96 0.11 0.16 -0.3 0.66 -0.42 0.07 -0.92
-0.29 0.31 1.38 0.97 -0.69 0.13 -0.42 1.12 -0.86 -0.3 1.24 1.82 -0.41 1.69 0.44 0.59 0.29 -0.26 -0.84 -1.83 -2.73 -1.49 -3.99 -0.94 -1.55 -1.8 -5.12 -3.22 -2.88 -1.57 -1.31 -3.53 1.82 -2.07 -2.53
-0.15 0.55 0.18 0.11 -1.05 0.72 0.19 -0.34 0.6 0.57 0.67 0.85 0.8 -0.34 -0.78 -0.89 -0.72 -0.19 -0.19 -2.33 -2.72 -1.22 -3.46 -1.91 -3.08 1.32 1.56 -0.67 -3.32 -1.39 -0.73 - 1.03 0.52 1.04
-0.89 -0.31 -0.63 -0.12 0.4 -0.52 -0.28 -0.12 -0.65 -0.43 -0.19 -0.21 -0.19 0.73 -0.44 -0.02 -1.16 0.23 0.6 1.01 -0.82 -0.0 -1.39 -0.73 -1.64 0.17 -0.43 -0.72 0.65 0.16 0.06 0.57 -0.36 0.98 1.32
-1.73 -1.44 -1.73 -1.26 -0.17 -1.27 -0.4 -1.49 -0.8 -0.73 -0.21 -0.52 -0.51 -0.14 0.87 1.19 0.95 0.6 0.7 1.22 -0.31 -0.4 -0.69 -0.76 -1.2 0.19 0.24 -2.85 0.94 -0.41 0.15 -0.2 -0.73 0.97 1.31
-0.71 -0.06 -0.6 -0.14 0.45 -0.62 -0.24 -0.45 -0.87 -0.34 -0.2 0.16 -0.39 1.03 -0.96 -0.85 -0.3 -0.29 0.2 0.44 0.32 0.99 -0.38 -0.89 -2.76 0.21 -0.33 -0.93 -0.03 -0.05 0.21 0.29 0.13 0.96 1.27
0.35 0.09 -0.6 -0.43 0.07 0.15 -0.1 -1.01 -0.25 0.09 0.34 0.71 -2.83 -0.82 -0.84 -0.64 -1.47 0.3 1.04 0.79 1.03 1.93 1.61 -0.8 -4.41 -2.94 -3.13 0.14 -1.15 -1.38 -3.37 -1.15 0.64 0.33 -0.96
-0.1 0.04 -0.43 0.1 -0.37 0.05 0.23 -0.41 0.22 0.16 0.52 0.74 -0.21 0.94 -1.19 -1.26 -2.13 -0.25 -0.11 -0.88 -1.61 -0.55 -0.79 -0.01 -0.11 -0.48 -0.39 0.74 -0.27 0.65 0.48 0.55 0.74 0.09 0.37
-0.67 0.08 -0.64 0.37 -0.13 -0.6 0.62 -1.1 0.01 -0.01 -0.1 0.69 0.24 1.84 -0.84 -0.74 -1.04 0.22 0.37 0.52 -2.56 -1.13 -1.38 -0.26 -0.15 0.08 -0.39 0.02 0.2 -0.24 -0.71 0.48 0.33 0.32 -0.2
-1.58 -0.6 -1.26 -0.76 -0.08 -0.99 -0.51 -1.33 -0.38 -0.48 0.43 0.87 0.36 0.48 -0.8 -0.09 -0.21 -0.02 0.51 0.89 0.21 0.65 0.44 -0.33 -1.6 0.1 -0.1 -2.22 -0.12 -0.3 -0.47 -0.06 0.76 0.95 0.99
0.11 1.05 0.14 0.86 0.37 0.3 0.94 0.9 0.39 0.65 -0.3 -0.38 -1.45 0.47 -0.89 -0.85 -3.18 0.08 0.99 -0.31 0.34 0.94 -0.3 -0.3 0.3 -2.53 -3.75 -0.36 -0.96 -0.87 -0.78 -0.57 0.27 -1.33 -1.44
-4.87 -3.3 -4.8 -3.51 0.23 -4.43 -3.45 -3.13 -2.43 -3.33 1.51 1.0 0.61 -0.28 -5.06 -4.33 -6.37 -1.78 -0.75 1.18 1.95 0.22 0.23 0.48 2.06 -1.25 -1.73 -0.68 -0.69 1.03 -1.45 1.97 1.14 -5.14 -1.83
-0.5 0.13 -0.53 0.49 -0.93 -0.59 0.35 0.67 -0.53 -0.31 -0.34 0.31 1.4 1.99 -1.52 -0.19 -1.76 0.45 0.68 0.01 -1.28 0.23 -1.12 -0.7 -1.24 -0.53 -0.75 -0.54 0.72 -0.37 -0.4 -0.32 0.19 -0.26 -1.39
-0.24 0.0 -1.63 -0.35 -0.43 0.14 0.48 -1.16 0.28 0.3 0.95 1.21 -0.47 -0.7 -0.42 -1.12 -0.39 -0.4 0.58 -1.64 -3.92 -1.58 -2.73 -0.94 -1.18 0.31 2.08 -0.62 -1.26 -0.52 -0.41 -0.93 1.19 0.14 1.26
-0.4 0.43 -0.24 0.7 -0.38 0.01 0.8 0.24 -0.2 0.11 0.33 -0.88 -0.46 0.53 -0.56 -0.48 -0.23 0.19 0.67 -0.49 0.16 0.29 -0.65 -0.39 -1.72 -0.74 -1.72 0.04 -0.36 -0.05 -0.67 0.57 -0.41 0.4 1.15
0.47 0.78 0.0 0.65 -0.22 0.78 0.95 0.39 0.72 0.59 -0.35 0.51 0.01 -0.83 -0.77 -1.2 -0.91 0.37 1.17 -1.19 -0.59 -0.58 -1.26 -1.44 -4.26 -1.51 -1.37 0.79 -0.9 -1.35 -2.31 -0.74 0.33 1.26 0.04
0.86 1.04 1.47 -0.26 0.49 0.38 -0.75 1.46 -1.46 -0.77 -1.93 -2.2 -5.65 -6.73 -0.33 -5.03 -2.03 0.22 -1.55 -1.74 -2.71 -1.88 -5.76 0.58 -2.79 -2.98 -1.71 -1.75 -4.29 1.88 2.97 0.64 -2.22 -2.32 -0.35
-0.46 0.16 -0.34 0.55 -1.01 0.2 0.42 0.02 0.59 0.43 -2.97 -2.46 2.27 1.76 -2.22 -0.91 -3.35 -0.74 0.51 0.38 -0.01 0.12 0.26 -0.77 -1.83 -0.31 -3.24 0.92 -0.36 -0.33 -1.09 0.83 -2.49 -1.95 -2.58

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.