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Heatmap: Cluster_27 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
Cpa|evm.model.tig00000025.56 (tig00020805_g14018.t1)
 - - - - - 4.37 - - - - - 1.69 - - - - - 1.05 - - - - - - - -
Cpa|evm.model.tig00000057.71 (tig00020878_g14856.t1)
 0.64 -1.86 -0.32 -0.42 0.74 1.46 0.59 0.45 1.2 1.48 -1.43 1.24 - -2.03 -1.53 -0.38 - - 0.42 - -1.88 -0.5 1.05 0.04 - -0.44
Cpa|evm.model.tig00000079.8 (tig00021434_g21334.t1)
 - - - - - 4.7 - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000117.7 (tig00000117_g6350.t1)
 - - 1.81 - - - - - - - 1.82 - - - - - - - - 4.04 - - - - - 1.3
Cpa|evm.model.tig00000117.8 (tig00000270_g23913.t1)
 0.88 - - - - 2.83 0.95 0.63 - 0.63 1.69 0.85 - - 2.18 - - 0.2 0.39 - - - - - - -
Cpa|evm.model.tig00000215.123 (tig00000215_g18665.t1)
 - - - - - 4.7 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00000339.20 (tig00000339_g24181.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000339.3 (tig00021137_g19023.t1)
 - - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00000396.13 (tig00000396_g24896.t1)
 0.07 - 2.52 - 0.84 2.7 - - - - -0.1 0.05 - - 0.77 -0.17 - - 1.68 - - -0.46 0.86 - -0.68 -
Cpa|evm.model.tig00000396.16 (tig00000630_g2711.t1)
 1.21 1.47 - - 1.12 2.75 - - - - 1.15 1.31 - 0.63 - - 1.19 - - - - - - - - 1.8
Cpa|evm.model.tig00000404.53 (tig00000404_g415.t1)
 - - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00000443.22 (tig00020918_g15895.t1)
 - - - - - 4.7 - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000451.21 (tig00000339_g24175.t1)
 - - - - - 3.92 - - 2.56 2.32 - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000526.15 (tig00000526_g1909.t1)
 1.37 - - - - - - - - - - - 2.28 2.22 1.3 1.28 - - - 2.88 - - 0.72 - - -
Cpa|evm.model.tig00000743.7 (tig00000743_g3857.t1)
 0.8 0.26 0.42 -0.37 -0.35 1.79 0.56 0.27 -0.3 -0.41 1.21 0.36 0.08 - - - - -0.86 0.1 - 0.71 -0.72 1.98 - - -
Cpa|evm.model.tig00000788.25 (tig00020961_g16736.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00000828.10 (tig00000828_g4611.t1)
 -1.32 1.02 - 0.17 -0.16 3.05 1.55 0.16 0.61 -1.5 - -0.36 - -0.03 -0.62 1.1 1.1 - -1.52 -1.77 - - - - - -
1.91 - - 2.29 3.02 2.11 - - - - - 2.3 - - - - - - - - - - - - - -
Cpa|evm.model.tig00000852.13 (tig00000852_g5030.t1)
 - - - - - 4.28 - - - - - - - - 2.7 - - - - - - - - - - -
Cpa|evm.model.tig00000912.11 (tig00020921_g15925.t1)
 -1.03 0.55 0.15 -1.09 0.17 1.32 -0.72 -0.37 - -0.24 0.14 - -1.77 -0.09 1.06 1.17 -0.02 0.85 0.28 -0.51 -0.07 -0.49 0.82 - -1.2 0.46
Cpa|evm.model.tig00001033.24 (tig00000367_g24441.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00001041.28 (tig00001041_g6569.t1)
 - - - - 2.17 3.05 - - - - - - 2.41 - - - - 2.56 - - 0.99 - - - - -
Cpa|evm.model.tig00001292.1 (tig00001292_g8036.t1)
 0.5 1.99 - 2.2 1.82 1.05 2.05 2.14 - - - 0.89 - - - - - - - - - - - - - -
Cpa|evm.model.tig00020510.114 (tig00020510_g9902.t1)
 0.19 -0.47 -1.4 -0.67 -0.6 0.0 -1.28 -0.73 -1.15 1.2 0.05 -0.09 0.9 0.76 -1.45 1.01 - 0.15 0.7 1.35 -2.19 -0.91 -1.86 - 1.3 0.03
Cpa|evm.model.tig00020531.20 (tig00020531_g10021.t1)
 - - - 1.02 - 3.37 1.28 - - - 1.49 0.03 - - 0.86 - - - 0.59 - 1.15 - - - 0.89 -
Cpa|evm.model.tig00020553.15 (tig00020553_g10508.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020555.7 (tig00020555_g10969.t1)
 - - - 1.77 - 3.08 - 0.59 - - 1.63 - - - - - - - - - 1.37 - -0.0 0.98 -0.3 1.66
Cpa|evm.model.tig00020629.72 (tig00020629_g12399.t1)
 - - - - - 4.7 - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020723.94 (tig00021015_g17152.t1)
 - 3.86 - - - - - - - - - - - - - - - - - 3.52 - - - - - -
- - - - - 3.27 - 2.26 - - - - - - - - - 1.78 3.02 - - - - - - -
Cpa|evm.model.tig00020801.17 (tig00020801_g13902.t1)
 1.05 - - 2.44 - 2.85 - - - - - - - 0.77 - - - 0.77 - - - - 2.98 - - -
Cpa|evm.model.tig00020801.9 (tig00020904_g15226.t1)
 - - - - - - - - - - - - 0.45 1.21 2.13 - - - - 4.06 - - -0.61 - -0.62 -
Cpa|evm.model.tig00020944.42 (tig00020944_g16391.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00020960.11 (tig00020960_g16533.t1)
 - - - - - 3.58 - - - - - - - - - 3.82 - - - - - - - - - -
Cpa|evm.model.tig00020960.47 (tig00020960_g16572.t1)
 - - - - - 3.38 - - - - - - - - - - - - - - - - 3.96 - - -
- - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00020996.52 (tig00020996_g16959.t2)
 - - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021038.27 (tig00021038_g17518.t1)
 - - - - - - - - - - - -1.7 - 0.78 0.28 -0.85 -0.58 -0.49 0.83 2.65 0.98 1.08 0.91 1.44 0.56 1.39
Cpa|evm.model.tig00021098.18 (tig00021098_g18186.t1)
 - - - - - - - - - - - - - - - - - - - - - - - - - -
Cpa|evm.model.tig00021123.18 (tig00020531_g9998.t1)
 - - - - - 2.44 0.14 0.89 - -0.12 0.92 0.02 - - - - 0.13 2.3 -0.42 - 0.49 1.89 - - 0.32 -0.57
Cpa|evm.model.tig00021127.50 (tig00021127_g18727.t1)
 - -1.59 -0.95 -0.87 -0.7 1.87 0.62 1.35 1.23 -0.29 0.24 -1.43 -2.64 -0.46 0.61 -0.45 0.49 1.06 0.97 -0.03 -2.98 -0.58 -2.05 -2.64 -1.4 -1.48
Cpa|evm.model.tig00021137.56 (tig00000829_g4677.t1)
 - - 2.44 - - 3.34 - - - - 2.4 - - - - - - - 2.37 - - - - - - -
Cpa|evm.model.tig00021137.8 (tig00021137_g18972.t1)
 - - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021168.36 (tig00021168_g19112.t1)
 - -0.63 - - -0.53 2.75 - -1.56 - -0.65 -1.58 - 0.07 -0.95 - -1.6 0.62 1.51 2.0 - -2.57 -1.98 -0.5 -0.47 -2.2 2.09
Cpa|evm.model.tig00021178.8 (tig00021178_g19196.t1)
 - - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
Cpa|evm.model.tig00021254.31 (tig00021254_g19711.t1)
 -1.59 -0.7 0.84 -1.21 0.07 1.16 -0.17 -0.4 -1.3 -0.35 0.68 1.13 0.88 - -1.54 -1.14 - 0.51 1.51 - 0.56 - 1.7 -1.39 - -0.15
Cpa|evm.model.tig00021294.2 (tig00021294_g20027.t1)
 - - - - - 4.66 - - - - - - -0.57 - - - - - - - - - - - - -
Cpa|evm.model.tig00021332.26 (tig00021332_g20344.t1)
 - - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021339.5 (tig00021339_g20382.t1)
 - - - - - - - - - - - - - - - - - - - 4.7 - - - - - -
Cpa|evm.model.tig00021357.56 (tig00000449_g958.t1)
 - - - - - 3.69 - - - - - - - - - - - - - 3.71 - - - - - -
Cpa|evm.model.tig00021762.19 (tig00021762_g23476.t1)
 0.48 0.67 0.14 -0.28 -0.67 1.45 -0.75 - 0.56 0.39 -0.27 1.23 1.39 -0.36 0.05 -1.97 - -2.4 -0.63 -0.55 - -2.11 0.39 0.33 - 1.11
Cpa|evm.model.tig00021795.25 (tig00021796_g23554.t1)
 - - - - - - - - - - - - - - 3.7 - - - - 3.7 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.