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  4. Sequence
  5. Cz02g27010.t1

Cz02g27010.t1


Description : Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Reverse transcriptase domain; Integrase zinc-binding domain; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g27010.t1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cz03g14150.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.02 OrthoFinder
Cz03g28140.t1 No alias Reverse transcriptase domain; Integrase zinc-binding... 0.04 OrthoFinder
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.1 OrthoFinder
Cz03g40140.t1 No alias Chromo domain; Integrase, catalytic core [Interproscan]. 0.06 OrthoFinder
Cz04g07280.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.02 OrthoFinder
Cz04g31300.t1 No alias Chromo domain [Interproscan]. 0.02 OrthoFinder
Cz04g31310.t1 No alias Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
Cz05g14160.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.06 OrthoFinder
Cz06g10270.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.03 OrthoFinder
Cz06g11150.t1 No alias Reverse transcriptase, RNase H-like domain; Integrase... 0.09 OrthoFinder
Cz06g22260.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz07g15230.t1 No alias Chromo domain [Interproscan]. 0.05 OrthoFinder
Cz09g23160.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.04 OrthoFinder
Cz11g01040.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.06 OrthoFinder
Cz15g18080.t1 No alias Chromo domain [Interproscan]. 0.06 OrthoFinder
Cz15g18110.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.03 OrthoFinder
UNPLg00342.t1 No alias Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01001218.1_cds_GFH17889.1_12366 HaLaN_14611, GFH17889 Reverse transcriptase, RNase H-like domain; Reverse... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498172.1_7125 KAA8498172 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500031.1_8984 KAA8500031 Transposon Tf2-6 polyprotein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496807.1_536 KAA8496807 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494421.1_2951 KAA8494421 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494327.1_4191 KAA8494327 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493427.1_9728 KAA8493427 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492973.1_2709 KAA8492973 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491610.1_5078 KAA8491610 Retrovirus-related Pol polyprotein from transposon 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491611.1_5079 KAA8491611 Retrovirus-related Pol polyprotein from transposon 17.6 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491326.1_2327 KAA8491326 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490790.1_5562 KAA8490790 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490538.1_5904 KAA8490538 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490463.1_6409 KAA8490463 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490242.1_5206 KAA8490242 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 429 587
IPR001584 Integrase_cat-core 950 1060
IPR041588 Integrase_H2C2 875 930
IPR041577 RT_RNaseH_2 652 750
No external refs found!