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  5. Cz02g25260.t1

Cz02g25260.t1


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0008566 (OrthoFinder) Phylogenetic Tree(s): OG0008566_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g25260.t1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cre12.g510150 30793475 Zinc finger CCCH domain-containing protein 48... 0.02 OrthoFinder
Dusal.0698s00001.1 33202027 WD40 repeat [Interproscan]. 0.02 OrthoFinder
EOD36919 No alias WD40 repeat [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
BP GO:0007009 plasma membrane organization IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015914 phospholipid transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0017121 plasma membrane phospholipid scrambling IEP Enrichment
MF GO:0017128 phospholipid scramblase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0034204 lipid translocation IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0045048 protein insertion into ER membrane IEP Enrichment
BP GO:0045332 phospholipid translocation IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051205 protein insertion into membrane IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097035 regulation of membrane lipid distribution IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
MF GO:0140303 intramembrane lipid transporter activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 128 162
IPR001680 WD40_repeat 212 243
No external refs found!