Description : Helicase, C-terminal; Domain of unknown function DUF1605; Helicase-associated domain; DEAD/DEAH box helicase domain [Interproscan].
Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cz02g22140.t1 | |
Cluster | HCCA: Cluster_130 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00021589.29 | tig00021589_g22735.t1 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00022075.25 | tig00022075_g23589.t1 | RNA processing.RNA splicing.spliceosome... | 0.01 | OrthoFinder | |
Cre03.g182950 | 30787736 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder | |
Cre07.g349100 | 30774605 | RNA processing.RNA splicing.spliceosome... | 0.08 | OrthoFinder | |
Cz04g05220.t1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
EOD05883 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.02 | OrthoFinder | |
EOD10970 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
EOD29635 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.02 | OrthoFinder | |
EOD31099 | No alias | Domain of unknown function DUF1605 [Interproscan]. | 0.02 | OrthoFinder | |
EOD31583 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
EOD37846 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.02 | OrthoFinder | |
OT_01G03120.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
OT_04G02170.1 | No alias | S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
OT_05G03840.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
PTI_07G04380.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
PTI_08G03610.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.01 | OrthoFinder | |
PTI_11G03860.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
Sro1676_g290440.1 | Contig3487.g27033 | Splicing factor ATP-dependent RNA helicase | 0.01 | OrthoFinder | |
Sro35_g022410.1 | Contig3323.g26118 | Splicing factor ATP-dependent RNA helicase | 0.01 | OrthoFinder | |
Sro657_g182550.1 | Contig301.g3975 | Splicing factor ATP-dependent RNA helicase-like protein cdc28 | 0.03 | OrthoFinder | |
TP01G06540.1 | No alias | Domain of unknown function DUF1605; S1 domain; Helicase,... | 0.01 | OrthoFinder | |
TP06G06120.1 | No alias | Domain of unknown function DUF1605; Helicase,... | 0.03 | OrthoFinder | |
Transcript_contig_53761 | 53761 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.01 | OrthoFinder | |
Transcript_contig_55707 | 55707 | Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... | 0.03 | OrthoFinder | |
Transcript_contig_55987 | 55987 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.01 | OrthoFinder | |
Transcript_contig_67459 | 67459 | Helicase, C-terminal; DEAD/DEAH box helicase domain... | 0.01 | OrthoFinder | |
Transcript_contig_89480 | 89480 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
Vocar.0037s0140.1 | 32897549 | Helicase-associated domain; Domain of unknown function... | 0.03 | OrthoFinder | |
XM_002500528.1 | MICPUN_97165, 97165 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
XM_002501417.1 | MICPUN_58037, 58037 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.05 | OrthoFinder | |
XM_002508712.1 | MICPUN_97967, 97967 | Helicase, C-terminal; Helicase-associated domain;... | 0.02 | OrthoFinder | |
XM_003057993.1 | MicpuC2_57106, 57106 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
XM_003057994.1 | MicpuC2_57107, 57107 | AAA+ ATPase domain; S1 domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|LHPG02000004.1_cds_PRW59127.1_7530 | PRW59127 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.03 | OrthoFinder | |
lcl|LHPG02000005.1_cds_PRW58375.1_7631 | PRW58375 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase | 0.04 | OrthoFinder | |
lcl|LHPG02000016.1_cds_PRW33665.1_3289 | PRW33665 | Putative ATP-dependent RNA helicase DHX35 | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000339 | RNA cap binding | IEP | Enrichment |
MF | GO:0000340 | RNA 7-methylguanosine cap binding | IEP | Enrichment |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
MF | GO:0003682 | chromatin binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003729 | mRNA binding | IEP | Enrichment |
MF | GO:0004367 | glycerol-3-phosphate dehydrogenase [NAD+] activity | IEP | Enrichment |
MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Enrichment |
MF | GO:0004665 | prephenate dehydrogenase (NADP+) activity | IEP | Enrichment |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
BP | GO:0006072 | glycerol-3-phosphate metabolic process | IEP | Enrichment |
BP | GO:0006099 | tricarboxylic acid cycle | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006397 | mRNA processing | IEP | Enrichment |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
BP | GO:0006508 | proteolysis | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
BP | GO:0006534 | cysteine metabolic process | IEP | Enrichment |
BP | GO:0006570 | tyrosine metabolic process | IEP | Enrichment |
BP | GO:0006571 | tyrosine biosynthetic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0008150 | biological_process | IEP | Enrichment |
BP | GO:0008152 | metabolic process | IEP | Enrichment |
MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Enrichment |
MF | GO:0008977 | prephenate dehydrogenase (NAD+) activity | IEP | Enrichment |
BP | GO:0009069 | serine family amino acid metabolic process | IEP | Enrichment |
BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Enrichment |
BP | GO:0009092 | homoserine metabolic process | IEP | Enrichment |
BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Enrichment |
BP | GO:0009987 | cellular process | IEP | Enrichment |
BP | GO:0015977 | carbon fixation | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Enrichment |
BP | GO:0016579 | protein deubiquitination | IEP | Enrichment |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
BP | GO:0019346 | transsulfuration | IEP | Enrichment |
BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Enrichment |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0036211 | protein modification process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
BP | GO:0046168 | glycerol-3-phosphate catabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
MF | GO:0047952 | glycerol-3-phosphate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
BP | GO:0050667 | homocysteine metabolic process | IEP | Enrichment |
BP | GO:0052646 | alditol phosphate metabolic process | IEP | Enrichment |
BP | GO:0070646 | protein modification by small protein removal | IEP | Enrichment |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Enrichment |
No external refs found! |