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  5. Cz02g21180.t1

Cz02g21180.t1


Description : gag-polypeptide of LTR copia-type [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g21180.t1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Cz01g34080.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz01g34120.t1 No alias Ribonuclease H domain [Interproscan]. 0.05 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.06 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.06 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.06 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.07 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz12g13180.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.08 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.06 OrthoFinder
Cz16g05020.t1 No alias Hypothetical protein 0.06 OrthoFinder
UNPLg00679.t1 No alias Hypothetical protein 0.06 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.1 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.1 OrthoFinder
lcl|BLLF01000379.1_cds_GFH11159.1_5636 HaLaN_06609, GFH11159 H0102C09.1 protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!