Description : Integrase, catalytic core [Interproscan].
Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cz02g21170.t1 | |
Cluster | HCCA: Cluster_230 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cz01g34150.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.05 | OrthoFinder | |
Cz02g10210.t1 | No alias | gag-polypeptide of LTR copia-type [Interproscan]. | 0.04 | OrthoFinder | |
Cz02g21060.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.05 | OrthoFinder | |
Cz02g21160.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.07 | OrthoFinder | |
Cz02g21220.t1 | No alias | Integrase, catalytic core; Reverse transcriptase,... | 0.05 | OrthoFinder | |
Cz02g21260.t1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
Cz03g25140.t1 | No alias | Ribonuclease H domain [Interproscan]. | 0.03 | OrthoFinder | |
Cz03g25200.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.03 | OrthoFinder | |
Cz05g10130.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.03 | OrthoFinder | |
Cz12g13100.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.07 | OrthoFinder | |
Cz14g04110.t1 | No alias | GAG-pre-integrase domain; Integrase, catalytic core... | 0.05 | OrthoFinder | |
Cz16g05080.t1 | No alias | gag-polypeptide of LTR copia-type; Zinc finger,... | 0.06 | OrthoFinder | |
Cz17g17240.t1 | No alias | Hypothetical protein | 0.04 | OrthoFinder | |
UNPLg00808.t1 | No alias | Hypothetical protein | 0.05 | OrthoFinder | |
lcl|BLLF01001303.1_cds_GFH18455.1_12932 | HaLaN_15267, GFH18455 | Reverse transcriptase Ty1/copia-type domain-containing protein | 0.02 | OrthoFinder | |
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 | KAA8490360 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 0.03 | OrthoFinder | |
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 | KAA8490368 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0015074 | DNA integration | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001584 | Integrase_cat-core | 4 | 61 |
No external refs found! |