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Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].
Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz02g21160.t1 | |
| Cluster | HCCA: Cluster_31 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz01g34080.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| Cz01g34090.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.03 | OrthoFinder | |
| Cz01g34170.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.08 | OrthoFinder | |
| Cz01g34200.t1 | No alias | gag-polypeptide of LTR copia-type; Zinc finger,... | 0.03 | OrthoFinder | |
| Cz02g21030.t1 | No alias | gag-polypeptide of LTR copia-type; Zinc finger,... | 0.06 | OrthoFinder | |
| Cz02g21050.t1 | No alias | gag-polypeptide of LTR copia-type [Interproscan]. | 0.05 | OrthoFinder | |
| Cz02g21060.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.08 | OrthoFinder | |
| Cz02g21080.t1 | No alias | GAG-pre-integrase domain; Integrase, catalytic core... | 0.03 | OrthoFinder | |
| Cz02g21170.t1 | No alias | Integrase, catalytic core [Interproscan]. | 0.07 | OrthoFinder | |
| Cz02g21180.t1 | No alias | gag-polypeptide of LTR copia-type [Interproscan]. | 0.02 | OrthoFinder | |
| Cz02g21220.t1 | No alias | Integrase, catalytic core; Reverse transcriptase,... | 0.08 | OrthoFinder | |
| Cz02g21230.t1 | No alias | Ribonuclease H domain [Interproscan]. | 0.06 | OrthoFinder | |
| Cz03g25140.t1 | No alias | Ribonuclease H domain [Interproscan]. | 0.08 | OrthoFinder | |
| Cz03g25170.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| Cz03g25180.t1 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| Cz03g25190.t1 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| Cz03g25200.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.08 | OrthoFinder | |
| Cz04g09130.t1 | No alias | Hypothetical protein | 0.08 | OrthoFinder | |
| Cz12g13180.t1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.09 | OrthoFinder | |
| Cz14g04110.t1 | No alias | GAG-pre-integrase domain; Integrase, catalytic core... | 0.08 | OrthoFinder | |
| Cz15g15060.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Cz16g05020.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Cz16g05030.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Cz16g05080.t1 | No alias | gag-polypeptide of LTR copia-type; Zinc finger,... | 0.03 | OrthoFinder | |
| Cz16g05110.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Cz17g17250.t1 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| UNPLg00551.t1 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| UNPLg00679.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| UNPLg00808.t1 | No alias | Hypothetical protein | 0.08 | OrthoFinder | |
| UNPLg00814.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| UNPLg00843.t1 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| UNPLg00866.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| UNPLg00888.t1 | No alias | Hypothetical protein | 0.06 | OrthoFinder | |
| UNPLg00911.t1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| lcl|VRMN01000031.1_cds_KAA8490368.1_5758 | KAA8490368 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009263 | deoxyribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0015074 | DNA integration | IEP | Enrichment |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013103 | RVT_2 | 232 | 285 |
| No external refs found! |