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  5. Cz02g21080.t1

Cz02g21080.t1


Description : GAG-pre-integrase domain; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g21080.t1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cz01g34120.t1 No alias Ribonuclease H domain [Interproscan]. 0.08 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz02g21030.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.17 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.02 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
Cz02g21290.t1 No alias Hypothetical protein 0.07 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.04 OrthoFinder
Cz03g25180.t1 No alias Hypothetical protein 0.14 OrthoFinder
Cz03g25190.t1 No alias Hypothetical protein 0.14 OrthoFinder
Cz04g09130.t1 No alias Hypothetical protein 0.08 OrthoFinder
Cz04g26160.t1 No alias Ribonuclease H domain [Interproscan]. 0.02 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.01 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
Cz15g15060.t1 No alias Hypothetical protein 0.09 OrthoFinder
Cz16g05020.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00679.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.09 OrthoFinder
UNPLg00843.t1 No alias Hypothetical protein 0.17 OrthoFinder
UNPLg00866.t1 No alias Hypothetical protein 0.25 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 209 325
IPR025724 GAG-pre-integrase_dom 135 196
No external refs found!