1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz02g21060.t1

Cz02g21060.t1


Description : Reverse transcriptase, RNA-dependent DNA polymerase; GAG-pre-integrase domain; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g21060.t1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 30786839 Retrovirus-related Pol polyprotein from transposon TNT... 0.04 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.07 OrthoFinder
Cz02g10210.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.05 OrthoFinder
Cz02g21030.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.1 OrthoFinder
Cz02g21050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.05 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
Cz02g21180.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.06 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.11 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.24 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.12 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.06 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.11 OrthoFinder
Cz12g13200.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz15g15050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.03 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.09 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.07 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.12 OrthoFinder
UNPLg00762.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.07 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.12 OrthoFinder
lcl|BLLF01001303.1_cds_GFH18455.1_12932 HaLaN_15267, GFH18455 Reverse transcriptase Ty1/copia-type domain-containing protein 0.02 OrthoFinder
lcl|BLLF01004109.1_cds_GFH28937.1_23414 HaLaN_27507, GFH28937 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499089.1_8042 KAA8499089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499574.1_8527 KAA8499574 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499575.1_8528 KAA8499575 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499576.1_8529 KAA8499576 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495516.1_1514 KAA8495516 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494985.1_3515 KAA8494985 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493111.1_9412 KAA8493111 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493112.1_9413 KAA8493112 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492487.1_9180 KAA8492487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492347.1_5530 KAA8492347 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491885.1_4893 KAA8491885 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491886.1_4894 KAA8491886 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491319.1_2320 KAA8491319 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491320.1_2321 KAA8491320 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490647.1_4689 KAA8490647 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490649.1_4691 KAA8490649 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490485.1_2847 KAA8490485 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490487.1_2849 KAA8490487 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490359.1_5749 KAA8490359 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 69 130
IPR001584 Integrase_cat-core 143 259
IPR013103 RVT_2 523 764
No external refs found!