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  5. Cz02g21030.t1

Cz02g21030.t1


Description : gag-polypeptide of LTR copia-type; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g21030.t1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cz01g34120.t1 No alias Ribonuclease H domain [Interproscan]. 0.08 OrthoFinder
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
Cz01g34170.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.08 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.1 OrthoFinder
Cz02g21080.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.17 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.1 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.02 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.14 OrthoFinder
Cz02g21290.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.1 OrthoFinder
Cz03g25180.t1 No alias Hypothetical protein 0.17 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
Cz04g09130.t1 No alias Hypothetical protein 0.09 OrthoFinder
Cz04g26160.t1 No alias Ribonuclease H domain [Interproscan]. 0.02 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.06 OrthoFinder
Cz12g13180.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.2 OrthoFinder
Cz12g13200.t1 No alias Hypothetical protein 0.05 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.11 OrthoFinder
Cz15g15060.t1 No alias Hypothetical protein 0.1 OrthoFinder
Cz16g05020.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.05 OrthoFinder
UNPLg00679.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.33 OrthoFinder
UNPLg00762.t1 No alias Hypothetical protein 0.01 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.33 OrthoFinder
UNPLg00843.t1 No alias Hypothetical protein 0.2 OrthoFinder
UNPLg00866.t1 No alias Hypothetical protein 0.33 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 347 364
No external refs found!