Cz02g19040.t1

Description : Ribosomal protein S13 [Interproscan].

Gene families : OG_01_0000909 (OrthoFinder) Phylogenetic Tree(s): OG0000909_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz02g19040.t1
Cluster	HCCA: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g493950	30792612, PRPS13	Protein biosynthesis.organelle translation...	0.23	OrthoFinder
Dusal.1916s00001.1	33187808	Ribosomal protein S13 [Interproscan].	0.02	OrthoFinder
OT_03G05840.1	No alias	Ribosomal protein S13 [Interproscan].	0.13	OrthoFinder
Sro51_chlor_g029670.1	Rps13	Rps13	0.04	OrthoFinder
Sro51_chlor_g029680.1	Rps11	Rps11	0.04	OrthoFinder
Sro884_mit_g215880.1	Rps13	Rps13	0.04	OrthoFinder
TPCG02670.1	No alias	Ribosomal protein S11 [Interproscan].	0.05	OrthoFinder
Transcript_contig_57743	57743	Ribosomal protein S13 [Interproscan].	0.04	OrthoFinder
Vocar.0031s0017.1	32890165	Ribosomal protein S13 [Interproscan].	0.05	OrthoFinder
XM_002506993.1	MICPUN_89270, 89270	Ribosomal protein S13, chloroplast precursor (RPS13)	0.08	OrthoFinder
XM_003054733.1	MicpuC2_45129, 45129	Ribosomal protein S13, chloroplast precursor (RPS13)	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006457	protein folding	IEP	Enrichment
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Enrichment
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
CC	GO:0019898	extrinsic component of membrane	IEP	Enrichment
MF	GO:0051920	peroxiredoxin activity	IEP	Enrichment
CC	GO:1990204	oxidoreductase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	41	145

External Links

No external refs found!

Cz02g19040.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation