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  5. Cz02g10210.t1

Cz02g10210.t1


Description : gag-polypeptide of LTR copia-type [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cz02g10210.t1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.05 OrthoFinder
Cz02g21170.t1 No alias Integrase, catalytic core [Interproscan]. 0.04 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.05 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz03g25140.t1 No alias Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.06 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.07 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.05 OrthoFinder
lcl|BLLF01001303.1_cds_GFH18455.1_12932 HaLaN_15267, GFH18455 Reverse transcriptase Ty1/copia-type domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!