Cz02g10110.t1

Description : Integrase zinc-binding domain; Integrase, catalytic core; Zinc finger, PHD-finger; Deoxynucleoside kinase domain; Reverse transcriptase, RNase H-like domain [Interproscan].

Gene families : OG_01_0000925 (OrthoFinder) Phylogenetic Tree(s): OG0000925_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz02g10110.t1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sro326_g117920.1	Contig1080.g10480	Retrotransposon protein	0.01	OrthoFinder
Sro384_g131350.1	Contig425.g5708	Retrotransposon protein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0005216	ion channel activity	IEP	Enrichment
MF	GO:0015267	channel activity	IEP	Enrichment
MF	GO:0015276	ligand-gated ion channel activity	IEP	Enrichment
MF	GO:0022803	passive transmembrane transporter activity	IEP	Enrichment
MF	GO:0022834	ligand-gated channel activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	741	786
IPR031314	DNK_dom	265	390
IPR041588	Integrase_H2C2	909	963
IPR001584	Integrase_cat-core	982	1088
IPR041373	RT_RNaseH	11	124

External Links

No external refs found!

Cz02g10110.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation