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  4. Sequence
  5. Cz02g02050.t1

Cz02g02050.t1


Description : Histone H2A/H2B/H3; Histone H2A, C-terminal domain [Interproscan].


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g02050.t1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.27 tig00021108_g18317.t1 Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder
Cre06.g264750 30778682, HTA14 Chromatin organisation.histones.H2A-type histone 0.27 OrthoFinder
Cre06.g264950 30779952 Chromatin organisation.histones.H2A-type histone 0.27 OrthoFinder
Cre06.g265350 30779523 Chromatin organisation.histones.H2A-type histone 0.23 OrthoFinder
Cre06.g266700 30779158 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre06.g268050 30779224, HTA10 Chromatin organisation.histones.H2A-type histone 0.21 OrthoFinder
Cre06.g268300 30778781, HTA9 Chromatin organisation.histones.H2A-type histone 0.21 OrthoFinder
Cre06.g271350 30779391 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre06.g273900 30779778 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre06.g274200 30778751 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre06.g274800 30780111, HTA26 Chromatin organisation.histones.H2A-type histone 0.2 OrthoFinder
Cre06.g275850 30779335 Chromatin organisation.histones.H2A-type histone 0.27 OrthoFinder
Cre06.g276500 30778822, HTA23 Chromatin organisation.histones.H2A-type histone 0.23 OrthoFinder
Cre06.g276950 30778754, HTA24 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre12.g504500 30793209 Chromatin organisation.histones.H2A-type histone 0.27 OrthoFinder
Cre12.g504750 30792225 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre12.g505550 30793129 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre12.g506250 30793152, HTA18 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre13.g567700 30783996 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre13.g570100 30784159, HTA2 Chromatin organisation.histones.H2A-type histone 0.3 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.29 OrthoFinder
Cre17.g708550 30781878, HTA20 Chromatin organisation.histones.H2A-type histone 0.23 OrthoFinder
Cre17.g709200 30782358 Chromatin organisation.histones.H2A-type histone 0.23 OrthoFinder
Cre17.g710400 30782701, HTA19 Chromatin organisation.histones.H2A-type histone 0.27 OrthoFinder
Cre17.g711700 30781638, HTA5 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre17.g713400 30781819 Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder
Cre17.g714500 30782017, HTA1 Chromatin organisation.histones.H2A-type histone 0.38 OrthoFinder
Dusal.0093s00031.1 33185335 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.14 OrthoFinder
Dusal.0093s00037.1 33185342 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.11 OrthoFinder
Dusal.0152s00023.1 33186201 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.08 OrthoFinder
Dusal.0165s00017.1 33193347 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.12 OrthoFinder
Dusal.0322s00015.1 33197808 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.06 OrthoFinder
Dusal.0688s00003.1 33202688 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.2 OrthoFinder
Dusal.0806s00004.1 33190343 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
EOD08304 No alias Putative histone H2A [Ensembl]. 0.2 OrthoFinder
EOD11956 No alias Putative histone H2A [Ensembl]. 0.09 OrthoFinder
EOD14007 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.01 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.18 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.18 OrthoFinder
OT_02G00110.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
OT_08G01910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.13 OrthoFinder
OT_12G00910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.06 OrthoFinder
OT_16G01100.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.18 OrthoFinder
PTI_06G01940.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.06 OrthoFinder
PTI_06G02110.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.05 OrthoFinder
Sro120_g058300.1 Contig2411.g19708 H2A.z 0.04 OrthoFinder
Sro311_g114190.1 Contig909.g9534 Histone H2A 0.01 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.07 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.05 OrthoFinder
TP03G01190.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
TP05G07700.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
TP07G03180.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.07 OrthoFinder
Vocar.0001s0459.1 32885662 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Vocar.0001s0880.1 32885856 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.01 OrthoFinder
Vocar.0001s1633.1 32885235 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0002s0391.1 32890987 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.2 OrthoFinder
Vocar.0002s0609.1 32891207 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0006s0196.1 32893915 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0016s0271.1 32898098 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0016s0282.1 32897978 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Vocar.0018s0027.1 32898733 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0027s0138.1 32887219 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Vocar.0027s0147.1 32887249 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Vocar.0028s0100.1 32895572 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
XM_002501356.1 MICPUN_81242, 81242 Histone H2A 0.06 OrthoFinder
XM_002503584.1 MICPUN_83469, 83469 Histone H2A 0.03 OrthoFinder
XM_003054928.1 MicpuC2_12375, 12375 Histone H2A 0.12 OrthoFinder
XM_003058838.1 MicpuC2_17393, 17393 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.12 OrthoFinder
XM_003063174.1 MicpuC2_11887, 11887 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60758.1_4580 PRW60758 Putative histone H2A variant 3 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56948.1_9006 PRW56948 Histone H2A 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57339.1_9052 PRW57339 Histone H2A 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32875.1_3737 PRW32875 Histone H2A 0.05 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32926.1_3778 PRW32926 Histone H2A 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32953.1_3761 PRW32953 Histone H2A 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33066.1_3814 PRW33066 Histone H2A 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492219.1_5402 KAA8492219 Histone H2A.V 0.05 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 10 88
IPR032454 Histone_H2A_C 91 123
No external refs found!