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  5. Cz01g42170.t1

Cz01g42170.t1


Description : AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core [Interproscan].


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g42170.t1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Vocar.0032s0138.1 32893709 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
lcl|BLLF01000909.1_cds_GFH15846.1_10323 HaLaN_12154, GFH15846 P60 katanin 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 311 440
IPR041569 AAA_lid_3 462 495
No external refs found!