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  5. Cz01g42060.t1

Cz01g42060.t1


Description : ShKT domain; Oxoglutarate/iron-dependent dioxygenase [Interproscan].


Gene families : OG_01_0000009 (OrthoFinder) Phylogenetic Tree(s): OG0000009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g42060.t1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Dusal.0391s00005.1 33187367 Oxoglutarate/iron-dependent dioxygenase [Interproscan]. 0.02 OrthoFinder
EOD27182 No alias Oxoglutarate/iron-dependent dioxygenase [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61425.1_475 PRW61425 Prolyl 4-hydroxylase subunit alpha-1 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56888.1_9438 PRW56888 Putative prolyl 4-hydroxylase 4 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006282 regulation of DNA repair IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051052 regulation of DNA metabolic process IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0080134 regulation of response to stress IEP Enrichment
BP GO:0080135 regulation of cellular response to stress IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001020 regulation of response to DNA damage stimulus IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005123 Oxoglu/Fe-dep_dioxygenase 101 217
IPR003582 ShKT_dom 235 269
No external refs found!