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  4. Sequence
  5. Cz01g41170.t1

Cz01g41170.t1


Description : WD40 repeat; PLAT/LH2 domain [Interproscan].


Gene families : OG_01_0000109 (OrthoFinder) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g41170.t1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.34 tig00000042_g15425.t1 Calpain-type cysteine protease DEK1 OS=Zea mays 0.04 OrthoFinder
Cpa|evm.model.tig00000178.39 tig00000178_g12750.t1 Cilia- and flagella-associated protein 44... 0.03 OrthoFinder
Cpa|evm.model.tig00001229.2 tig00001229_g7835.t1 No description available 0.02 OrthoFinder
Cre06.g303400 30779939, FAP16 No description available 0.03 OrthoFinder
Dusal.0100s00008.1 33202476 HELP [Interproscan]. 0.02 OrthoFinder
Dusal.0177s00014.1 33189755 WD40 repeat; PLAT/LH2 domain [Interproscan]. 0.04 OrthoFinder
Dusal.0177s00015.1 33189759 HELP [Interproscan]. 0.04 OrthoFinder
Dusal.0285s00022.1 33192887 HELP [Interproscan]. 0.02 OrthoFinder
EOD39577 No alias HELP [Interproscan]. 0.02 OrthoFinder
Vocar.0015s0354.1 32898827 WD40 repeat; HELP; PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder
Vocar.0029s0133.1 32887586 WD40 repeat [Interproscan]. 0.03 OrthoFinder
XM_002502455.1 MICPUN_58565, 58565 HELP; PLAT/LH2 domain; WD40 repeat [Interproscan]. 0.03 OrthoFinder
XM_002508893.1 MICPUN_52616, 52616 Hypothetical protein 0.05 OrthoFinder
XM_003055148.1 MicpuC2_6804, 6804 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003063748.1 MicpuC2_42955, 42955 HELP; WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003064451.1 MicpuC2_23558, 23558 HELP; Anaphase-promoting complex subunit 4, WD40 domain;... 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59716.1_6391 PRW59716 Lipoxygenase homology domain-containing 1 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR001024 PLAT/LH2_dom 1521 1623
IPR001024 PLAT/LH2_dom 231 336
IPR001024 PLAT/LH2_dom 2599 2705
IPR001024 PLAT/LH2_dom 1391 1494
IPR001024 PLAT/LH2_dom 1778 1880
IPR001024 PLAT/LH2_dom 2425 2534
IPR001024 PLAT/LH2_dom 2168 2270
IPR001024 PLAT/LH2_dom 1908 2017
IPR001024 PLAT/LH2_dom 882 984
IPR001024 PLAT/LH2_dom 1007 1122
IPR001024 PLAT/LH2_dom 2769 2873
IPR001024 PLAT/LH2_dom 617 727
IPR001024 PLAT/LH2_dom 370 478
IPR001024 PLAT/LH2_dom 1650 1756
IPR001024 PLAT/LH2_dom 750 856
IPR001024 PLAT/LH2_dom 1137 1248
IPR001024 PLAT/LH2_dom 492 598
IPR001024 PLAT/LH2_dom 1268 1371
IPR001024 PLAT/LH2_dom 2038 2139
IPR001024 PLAT/LH2_dom 2295 2404
IPR001680 WD40_repeat 120 155
No external refs found!