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  5. Cz01g41070.t1

Cz01g41070.t1


Description : Nucleoporin Nup120/160; WD40 repeat; EF-hand domain [Interproscan].


Gene families : OG_01_0001478 (OrthoFinder) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g41070.t1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000760.20 tig00000760_g3942.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00020537.21 tig00020537_g10243.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00020909.6 tig00020909_g15325.t1 No description available 0.02 OrthoFinder
Cre07.g313850 30774883 Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder
Cre13.g562800 30784303 No description available 0.04 OrthoFinder
Dusal.0255s00013.1 33188955 WD40 repeat; EF-hand domain; Nucleoporin Nup120/160... 0.05 OrthoFinder
Dusal.0471s00005.1 33188520 WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0028s0019.1 32895518 WD40 repeat; EF-hand domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000623.1_cds_GFH13534.1_8011 HaLaN_09434, GFH13534 EF-hand domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000867.1_cds_GFH15559.1_10036 HaLaN_11805, GFH15559 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01002532.1_cds_GFH24423.1_18900 HaLaN_22218, GFH24423 Hypothetical protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 193 257
IPR001680 WD40_repeat 649 681
IPR001680 WD40_repeat 475 509
IPR001680 WD40_repeat 831 868
No external refs found!