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  5. Cz01g39060.t1

Cz01g39060.t1


Description : Tuftelin interacting protein, N-terminal domain; GC-rich sequence DNA-binding factor-like domain; G-patch domain [Interproscan].


Gene families : OG_01_0000707 (OrthoFinder) Phylogenetic Tree(s): OG0000707_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g39060.t1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001065.25 tig00001065_g6727.t1 No description available 0.02 OrthoFinder
Cre07.g325713 30775336 RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder
Cre09.g388986 30781056 No description available 0.02 OrthoFinder
Dusal.0019s00018.1 33192533 GC-rich sequence DNA-binding factor-like domain;... 0.03 OrthoFinder
PTI_04G03400.1 No alias Tuftelin interacting protein, N-terminal domain; G-patch... 0.03 OrthoFinder
Sro1159_g247650.1 Contig4112.g31383 Tuftelin-interacting protein 11 0.01 OrthoFinder
Transcript_contig_57908 57908 Hypothetical protein 0.01 OrthoFinder
Transcript_contig_78545 78545 GC-rich sequence DNA-binding factor-like domain; G-patch... 0.01 OrthoFinder
Vocar.0003s0174.1 32889007 G-patch domain; GC-rich sequence DNA-binding factor-like... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
BP GO:0016556 mRNA modification IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0080009 mRNA methylation IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
InterPro domains Description Start Stop
IPR022783 GCFC_dom 427 524
IPR000467 G_patch_dom 207 249
IPR022159 STIP/TFIP11_N 6 100
No external refs found!