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  5. Cz01g34170.t1

Cz01g34170.t1


Description : Reverse transcriptase, RNA-dependent DNA polymerase; Ribonuclease H domain [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g34170.t1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cz01g34150.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
Cz01g34190.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz02g21030.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.08 OrthoFinder
Cz02g21050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.06 OrthoFinder
Cz02g21060.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.07 OrthoFinder
Cz02g21080.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.04 OrthoFinder
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
Cz02g21180.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.06 OrthoFinder
Cz02g21220.t1 No alias Integrase, catalytic core; Reverse transcriptase,... 0.07 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.05 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.08 OrthoFinder
Cz02g21270.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
Cz02g21290.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz03g25180.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz03g25190.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz03g25200.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
Cz04g26160.t1 No alias Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.08 OrthoFinder
Cz12g13180.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz14g04110.t1 No alias GAG-pre-integrase domain; Integrase, catalytic core... 0.07 OrthoFinder
Cz15g15050.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.04 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.04 OrthoFinder
Cz17g17240.t1 No alias Hypothetical protein 0.05 OrthoFinder
Cz17g17250.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00686.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00762.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.1 OrthoFinder
UNPLg00814.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00843.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00866.t1 No alias Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01000379.1_cds_GFH11159.1_5636 HaLaN_06609, GFH11159 H0102C09.1 protein 0.02 OrthoFinder
lcl|BLLF01000873.1_cds_GFH15607.1_10084 HaLaN_11860, GFH15607 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 32 162
IPR002156 RNaseH_domain 256 377
No external refs found!