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  5. Cz01g34080.t1

Cz01g34080.t1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g34080.t1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cz02g21160.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz02g21180.t1 No alias gag-polypeptide of LTR copia-type [Interproscan]. 0.03 OrthoFinder
Cz02g21230.t1 No alias Ribonuclease H domain [Interproscan]. 0.04 OrthoFinder
Cz02g21260.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz03g25180.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz04g09130.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz05g10130.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
Cz12g13100.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
Cz14g04120.t1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
Cz16g05080.t1 No alias gag-polypeptide of LTR copia-type; Zinc finger,... 0.04 OrthoFinder
Cz16g05110.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00762.t1 No alias Hypothetical protein 0.02 OrthoFinder
UNPLg00808.t1 No alias Hypothetical protein 0.03 OrthoFinder
UNPLg00888.t1 No alias Hypothetical protein 0.04 OrthoFinder
UNPLg00911.t1 No alias Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01000379.1_cds_GFH11159.1_5636 HaLaN_06609, GFH11159 H0102C09.1 protein 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490360.1_5750 KAA8490360 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490368.1_5758 KAA8490368 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045149 acetoin metabolic process IEP Enrichment
BP GO:0045151 acetoin biosynthetic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0047605 acetolactate decarboxylase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1902652 secondary alcohol metabolic process IEP Enrichment
BP GO:1902653 secondary alcohol biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 329 570
No external refs found!