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  5. Cz01g28170.t1

Cz01g28170.t1


Description : EF-hand domain [Interproscan].


Gene families : OG_01_0000037 (OrthoFinder) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g28170.t1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000692.65 tig00000692_g3264.t1 Calmodulin-2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cpa|evm.model.tig00001388.4 tig00001388_g8574.t1 Caltractin OS=Scherffelia dubia 0.05 OrthoFinder
Cpa|evm.model.tig00021435.44 tig00021435_g21427.t1 Calmodulin OS=Mougeotia scalaris 0.04 OrthoFinder
Cpa|evm.model.tig00021720.13 tig00021720_g23183.t1 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder
Cre03.g178150 30788235, CAM1 Calmodulin OS=Chlamydomonas reinhardtii 0.02 OrthoFinder
Dusal.1124s00002.1 33189601 EF-hand domain [Interproscan]. 0.02 OrthoFinder
EOD09660 No alias Centrin [Ensembl]. 0.01 OrthoFinder
PTI_27G00410.1 No alias EF-hand domain [Interproscan]. 0.01 OrthoFinder
Vocar.0012s0203.1 32894916 EF-hand domain [Interproscan]. 0.06 OrthoFinder
Vocar.0015s0348.1 32899204 EF-hand domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50910.1_763 PRW50910 Putative calcium-binding CML20 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0042546 cell wall biogenesis IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 13 73
No external refs found!