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  5. Cz01g28120.t1

Cz01g28120.t1


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g28120.t1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Cre12.g507200 30791912 No description available 0.02 OrthoFinder
EOD04963 No alias U box domain [Interproscan]. 0.02 OrthoFinder
Sro305_g112760.1 Contig560.g7117 U-box domain-containing protein 0.03 OrthoFinder
XM_003056168.1 MicpuC2_46556, 46556 U box domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000032.1_cds_GFH06298.1_775 HaLaN_00905, GFH06298 U-box domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60572.1_4222 PRW60572 Flowering time control FPA isoform A 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57847.1_8286 PRW57847 Ankyrin repeat 0.03 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20571.1_5453 PRW20571 WD40 repeat 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005384 manganese ion transmembrane transporter activity IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0030026 cellular manganese ion homeostasis IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055071 manganese ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 199 234
IPR001680 WD40_repeat 119 154
IPR001680 WD40_repeat 279 313
IPR001680 WD40_repeat 159 194
IPR001680 WD40_repeat 4 34
IPR001680 WD40_repeat 81 114
IPR001680 WD40_repeat 39 74
IPR001680 WD40_repeat 239 274
No external refs found!