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  5. Cz01g25050.t1

Cz01g25050.t1


Description : Midasin, AAA lid domain 7; ATPase, dynein-related, AAA domain; Midasin AAA lid domain 5 [Interproscan].


Gene families : OG_01_0000696 (OrthoFinder) Phylogenetic Tree(s): OG0000696_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g25050.t1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.82 tig00000403_g342.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder
Cre03.g161800 30788217 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
EOD04726 No alias Midasin AAA lid domain 5; ATPase, dynein-related, AAA... 0.01 OrthoFinder
EOD09279 No alias Midasin, AAA lid domain 7; Midasin AAA lid domain 5;... 0.07 OrthoFinder
EOD09280 No alias von Willebrand factor, type A [Interproscan]. 0.01 OrthoFinder
OT_01G04150.1 No alias Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.04 OrthoFinder
PTI_00G02450.1 No alias Hypothetical protein 0.01 OrthoFinder
PTI_27G01500.1 No alias Midasin, AAA lid domain 7; Midasin AAA lid domain 5;... 0.03 OrthoFinder
Transcript_contig_61650 61650 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_65064 65064 Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.05 OrthoFinder
Transcript_contig_78617 78617 Hypothetical protein 0.07 OrthoFinder
Transcript_contig_9424 9424 Hypothetical protein 0.02 OrthoFinder
XM_002508113.1 MICPUN_76243, 76243 Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01000887.1_cds_GFH15700.1_10177 HaLaN_11977, GFH15700 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01004642.1_cds_GFH30001.1_24478 HaLaN_28767, GFH30001 VWFA domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39247.1_2461 PRW39247 Type A von Willebrand factor domain-containing 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011704 ATPase_dyneun-rel_AAA 975 1073
IPR011704 ATPase_dyneun-rel_AAA 2604 2653
IPR011704 ATPase_dyneun-rel_AAA 782 828
IPR011704 ATPase_dyneun-rel_AAA 392 519
IPR011704 ATPase_dyneun-rel_AAA 1728 1815
IPR011704 ATPase_dyneun-rel_AAA 2008 2146
IPR011704 ATPase_dyneun-rel_AAA 2403 2446
IPR011704 ATPase_dyneun-rel_AAA 1260 1395
IPR011704 ATPase_dyneun-rel_AAA 1581 1642
IPR041190 Midasin_AAA_lid_5 1086 1186
IPR040848 AAA_lid_7 1407 1500
IPR040848 AAA_lid_7 624 707
IPR040848 AAA_lid_7 2158 2305
No external refs found!