Description : Helicase, C-terminal; Domain of unknown function DUF1605; Helicase-associated domain; DEAD/DEAH box helicase domain [Interproscan].
Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cz01g23210.t1 | |
Cluster | HCCA: Cluster_57 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000113.111 | tig00000113_g5693.t1 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cpa|evm.model.tig00022075.25 | tig00022075_g23589.t1 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder | |
Cre07.g329150 | 30774611 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.03 | OrthoFinder | |
Cre07.g352251 | 30775310 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Dusal.0072s00015.1 | 33199066 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
EOD10970 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
EOD31583 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.03 | OrthoFinder | |
EOD37846 | No alias | ATP-dependent RNA helicase [Ensembl]. | 0.02 | OrthoFinder | |
OT_01G03120.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.04 | OrthoFinder | |
OT_04G02170.1 | No alias | S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
OT_05G03840.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
OT_14G00410.1 | No alias | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
PTI_05G02970.1 | No alias | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.06 | OrthoFinder | |
Sro4_g003320.1 | Contig3815.g29250 | Splicing factor ATP-dependent RNA helicase | 0.05 | OrthoFinder | |
Sro834_g208730.1 | Contig2061.g17675 | Splicing factor ATP-dependent RNA helicase | 0.04 | OrthoFinder | |
TP13G03460.1 | No alias | Domain of unknown function DUF1605; Helicase-associated... | 0.04 | OrthoFinder | |
Transcript_contig_53761 | 53761 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
Transcript_contig_55987 | 55987 | Helicase-associated domain; Helicase, C-terminal; Domain... | 0.02 | OrthoFinder | |
Vocar.0015s0262.1 | 32898968 | Helicase-associated domain; Domain of unknown function... | 0.02 | OrthoFinder | |
Vocar.0017s0041.1 | 32891358 | Domain of unknown function DUF1605; Helicase,... | 0.02 | OrthoFinder | |
XM_002501417.1 | MICPUN_58037, 58037 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
XM_002502185.1 | MICPUN_81845, 81845 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.06 | OrthoFinder | |
XM_002507667.1 | MICPUN_51830, 51830 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.03 | OrthoFinder | |
XM_003057993.1 | MicpuC2_57106, 57106 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.02 | OrthoFinder | |
XM_003057994.1 | MicpuC2_57107, 57107 | AAA+ ATPase domain; S1 domain [Interproscan]. | 0.02 | OrthoFinder | |
XM_003058999.1 | MicpuC2_33717, 33717 | Helicase, C-terminal; Helicase-associated domain; Domain... | 0.04 | OrthoFinder | |
lcl|LHPG02000002.1_cds_PRW60688.1_4603 | PRW60688 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase | 0.04 | OrthoFinder | |
lcl|LHPG02000004.1_cds_PRW59127.1_7530 | PRW59127 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | OrthoFinder | |
lcl|LHPG02000018.1_cds_PRW32898.1_3654 | PRW32898 | ATP-dependent RNA helicase isoform X1 | 0.02 | OrthoFinder | |
lcl|LHPG02000023.1_cds_PRW20509.1_5500 | PRW20509 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | 0.03 | OrthoFinder | |
lcl|VRMN01000003.1_cds_KAA8495728.1_1726 | KAA8495728 | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004386 | helicase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Enrichment |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
BP | GO:0006605 | protein targeting | IEP | Enrichment |
BP | GO:0006612 | protein targeting to membrane | IEP | Enrichment |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Enrichment |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008312 | 7S RNA binding | IEP | Enrichment |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
BP | GO:0009987 | cellular process | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0033365 | protein localization to organelle | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0045047 | protein targeting to ER | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
CC | GO:0048500 | signal recognition particle | IEP | Enrichment |
MF | GO:0051082 | unfolded protein binding | IEP | Enrichment |
BP | GO:0051668 | localization within membrane | IEP | Enrichment |
BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Enrichment |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Enrichment |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Enrichment |
BP | GO:0072657 | protein localization to membrane | IEP | Enrichment |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
No external refs found! |