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  5. Cz01g23130.t1

Cz01g23130.t1


Description : Pre-mRNA-splicing factor 38 [Interproscan].


Gene families : OG_01_0002202 (OrthoFinder) Phylogenetic Tree(s): OG0002202_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g23130.t1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Cre03.g178300 30787482 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61404.1_344 PRW61404 Pre-mRNA-splicing factor 38B isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005874 microtubule IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
MF GO:0019799 tubulin N-acetyltransferase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0071929 alpha-tubulin acetylation IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
CC GO:0099081 supramolecular polymer IEP Enrichment
CC GO:0099512 supramolecular fiber IEP Enrichment
CC GO:0099513 polymeric cytoskeletal fiber IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR005037 PRP38 2 134
No external refs found!