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  5. Cz01g16250.t1

Cz01g16250.t1


Description : Snf7 family [Interproscan].


Gene families : OG_01_0003320 (OrthoFinder) Phylogenetic Tree(s): OG0003320_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g16250.t1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.72 tig00020554_g10852.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.01 OrthoFinder
Cre03.g188500 30787941, VPS46 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder
PTI_07G00050.1 No alias Snf7 family [Interproscan]. 0.02 OrthoFinder
Sro1644_g288170.1 Contig3810.g29186 ESCRT-related protein 0.01 OrthoFinder
Sro4183_g353300.1 Contig152.g1716 ESCRT-related protein 0.02 OrthoFinder
XM_002508689.1 MICPUN_109016, 109016 Snf7 family [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60243.1_4769 PRW60243 Charged multivesicular body 1-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006077 (1->6)-beta-D-glucan metabolic process IEP Enrichment
BP GO:0006078 (1->6)-beta-D-glucan biosynthetic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005024 Snf7_fam 9 174
No external refs found!