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  5. Cz01g14100.t1

Cz01g14100.t1


Description : DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase, catalytic domain [Interproscan].


Gene families : OG_01_0003087 (OrthoFinder) Phylogenetic Tree(s): OG0003087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz01g14100.t1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_55862 55862 DNA glycosylase/AP lyase, H2TH DNA-binding;... 0.01 OrthoFinder
XM_003055455.1 MicpuC2_43803, 43803 Formamidopyrimidine-DNA glycosylase, catalytic domain;... 0.02 OrthoFinder
lcl|BLLF01000775.1_cds_GFH14858.1_9335 HaLaN_10985, GFH14858 H2TH domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA Interproscan
BP GO:0006284 base-excision repair IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004857 enzyme inhibitor activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009611 response to wounding IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR015886 DNA_glyclase/AP_lyase_DNA-bd 147 233
IPR012319 FPG_cat 1 132
No external refs found!