Cz01g02140.t1

Description : Chromo domain; Integrase, catalytic core [Interproscan].

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz01g02140.t1
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
Cz07g09140.t1	No alias	Hypothetical protein	0.09	OrthoFinder
Cz18g14030.t1	No alias	Reverse transcriptase domain [Interproscan].	0.03	OrthoFinder
Sro1418_g270990.1	Contig4752.g35215	Transposon Tf2	0.01	OrthoFinder
lcl\|BLLF01000958.1_cds_GFH16187.1_10664	HaLaN_12562, GFH16187	Hypothetical protein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498182.1_7135	KAA8498182	Hypothetical protein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498876.1_7829	KAA8498876	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498877.1_7830	KAA8498877	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495320.1_1318	KAA8495320	Retrotransposon-derived protein PEG10	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495846.1_1844	KAA8495846	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494765.1_3295	KAA8494765	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8493085.1_2821	KAA8493085	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491585.1_5053	KAA8491585	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490384.1_3741	KAA8490384	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	289	333
IPR001584	Integrase_cat-core	1	106

External Links

No external refs found!