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  5. Cpa|evm.model.tig00000939.9

Cpa|evm.model.tig00000939.9 (tig00000939_g5487.t1)


Aliases : tig00000939_g5487.t1

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec13 scaffolding component


Gene families : OG_01_0000807 (OrthoFinder) Phylogenetic Tree(s): OG0000807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000939.9
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Cz03g29060.t1 No alias WD40 repeat [Interproscan]. 0.01 OrthoFinder
Cz03g29070.t1 No alias WD40 repeat [Interproscan]. 0.03 OrthoFinder
Dusal.0081s00032.1 33198240 WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro909_g218970.1 Contig366.g4939 Nucleoporin SEH1 0.02 OrthoFinder
XM_002509120.1 MICPUN_95648, 95648 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003061805.1 MicpuC2_48340, 48340 WD40 repeat [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01002270.1_cds_GFH23428.1_17905 HaLaN_21039, GFH23428 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499989.1_8942 KAA8499989 Nucleoporin seh1-A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 58 97
IPR001680 WD40_repeat 17 46
IPR001680 WD40_repeat 195 230
No external refs found!