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  5. Transcript_contig_89908

Transcript_contig_89908 (89908)


Aliases : 89908

Description : Heavy metal-associated domain, HMA; E1-E2 ATPase [Interproscan].


Gene families : OG_01_0000186 (OrthoFinder) Phylogenetic Tree(s): OG0000186_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_89908
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Cz07g25110.t1 No alias Heavy metal-associated domain, HMA; E1-E2 ATPase;... 0.02 OrthoFinder
EOD22718 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
Sro1089_g240080.1 Contig345.g4656 Copper-transporting ATPase 1 (Fragment) 0.01 OrthoFinder
Vocar.0062s0026.1 32892897 E1-E2 ATPase; haloacid dehalogenase-like hydrolase;... 0.01 OrthoFinder
XM_003059209.1 MicpuC2_58940, 58940 haloacid dehalogenase-like hydrolase; Heavy... 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60881.1_690 PRW60881 Heavy metal P-type ATPase 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0030001 metal ion transport IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005516 calmodulin binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
InterPro domains Description Start Stop
IPR006121 HMA_dom 149 189
No external refs found!