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  5. Transcript_contig_89690

Transcript_contig_89690 (89690)


Aliases : 89690

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001221 (OrthoFinder) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_89690
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cz02g41230.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
OT_02G01840.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
PTI_14G02610.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
CC GO:0030289 protein phosphatase 4 complex IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 77 243
IPR001650 Helicase_C 287 392
No external refs found!