Transcript_contig_89618 (89618)

Aliases : 89618

Description : Nucleolar, Nop52 [Interproscan].

Gene families : OG_01_0003254 (OrthoFinder) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_89618
Cluster	HCCA: Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g019200	30788766	No description available	0.01	OrthoFinder
EOD09537	No alias	Nucleolar, Nop52 [Interproscan].	0.01	OrthoFinder
Sro550_g164740.1	Contig731.g8404	RNA processing protein 1 homolog B	0.01	OrthoFinder
TP02G06580.1	No alias	Nucleolar, Nop52 [Interproscan].	0.02	OrthoFinder
UNPLg00194.t1	No alias	Nucleolar, Nop52 [Interproscan].	0.02	OrthoFinder
XM_002505441.1	MICPUN_87731, 87731	Nucleolar, Nop52 [Interproscan].	0.02	OrthoFinder
XM_003059715.1	MicpuC2_18763, 18763	Nucleolar, Nop52 [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01003292.1_cds_GFH26930.1_21407	HaLaN_25164, GFH26930	Nucleolar, Nop52 [Interproscan].	0.01	OrthoFinder
lcl\|LHPG02000026.1_cds_PRW18349.1_5786	PRW18349	Ribosomal RNA processing 1-like protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030688	preribosome, small subunit precursor	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0009982	pseudouridine synthase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016866	intramolecular transferase activity	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR010301	Nop52	20	227

External Links

No external refs found!