Transcript_contig_89467 (89467)

Aliases : 89467

Description : Cyclin, C-terminal domain; Pentatricopeptide repeat; Cyclin, N-terminal [Interproscan].

Gene families : OG_01_0007788 (OrthoFinder) Phylogenetic Tree(s): OG0007788_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_89467
Cluster	HCCA: Cluster_183

Target	Alias	Description	ECC score	Gene Family Method	Actions
Vocar.0016s0194.1	32897980	Cyclin, N-terminal; Pentatricopeptide repeat [Interproscan].	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0018995	host cellular component	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0030247	polysaccharide binding	IEP	Enrichment
MF	GO:2001070	starch binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	293	321
IPR006671	Cyclin_N	673	748
IPR004367	Cyclin_C-dom	802	875
IPR002885	Pentatricopeptide_repeat	210	269
IPR002885	Pentatricopeptide_repeat	324	371
IPR002885	Pentatricopeptide_repeat	394	441

External Links

No external refs found!