Transcript_contig_89432 (89432)

Aliases : 89432

Description : Archaeal/bacterial/fungal rhodopsins; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain [Interproscan].

Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_89432
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000140.15	tig00000140_g8470.t1	Ethylene receptor 1 OS=Cucumis melo var. cantalupensis	0.01	OrthoFinder
Cpa\|evm.model.tig00000140.9	tig00000140_g8468.t1	No description available	0.01	OrthoFinder
Cpa\|evm.model.tig00000158.13	tig00000158_g10126.t1	External stimuli response.light.red/far red light.PHY...	0.01	OrthoFinder
Cpa\|evm.model.tig00000325.13	tig00000325_g24095.t1	Ethylene receptor 2 OS=Solanum lycopersicum	0.01	OrthoFinder
Cpa\|evm.model.tig00001331.12	tig00001331_g8175.t1	Histidine kinase 2 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cpa\|evm.model.tig00020553.263	tig00020553_g10749.t1	Probable histidine kinase 4 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cpa\|evm.model.tig00020616.22	tig00020616_g12258.t1	Probable histidine kinase 3 OS=Oryza sativa subsp. indica	0.01	OrthoFinder
Cpa\|evm.model.tig00020660.47	tig00020660_g12551.t1	UDP-xylose transporter 1 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cpa\|evm.model.tig00020710.84	tig00020710_g13337.t1	Probable histidine kinase 4 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cpa\|evm.model.tig00020934.42	tig00020934_g16110.t1	Ethylene receptor 1 OS=Solanum lycopersicum	0.01	OrthoFinder
Cpa\|evm.model.tig00021179.53	tig00021179_g19270.t1	Probable histidine kinase 5 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder
Cre07.g329900	30775034	Histidine kinase 5 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre13.g571200	30784146	Probable histidine kinase 1 OS=Oryza sativa subsp. indica	0.02	OrthoFinder
Cz12g05190.t1	No alias	Archaeal/bacterial/fungal rhodopsins; Sterile alpha...	0.02	OrthoFinder
Dusal.0607s00010.1	33187794	Signal transduction response regulator, receiver domain...	0.02	OrthoFinder
PTI_18G01300.1	No alias	Histidine kinase/HSP90-like ATPase [Interproscan].	0.01	OrthoFinder
PTI_22G00210.1	No alias	PAS fold-4; Signal transduction histidine kinase,...	0.02	OrthoFinder
Sro1435_g272380.1	Contig4058.g31114	Hybrid signal transduction histidine kinase J	0.01	OrthoFinder
Sro346_g122750.1	Contig4731.g35102	Hybrid signal transduction histidine kinase J	0.02	OrthoFinder
Sro508_g156640.1	Contig2824.g22619	Hybrid signal transduction histidine kinase K	0.02	OrthoFinder
SymbC1.scaffold22.248	22.248	PAS fold; Regulator of K+ conductance, C-terminal;...	0.01	OrthoFinder
SymbC1.scaffold27529.1	27529.1	Histidine kinase/HSP90-like ATPase; Signal transduction...	0.01	OrthoFinder
Vocar.0003s0423.1	32889392	Histidine kinase/HSP90-like ATPase; Signal transduction...	0.04	OrthoFinder
Vocar.0018s0081.1	32898547	Signal transduction response regulator, receiver domain...	0.02	OrthoFinder
Vocar.0069s0008.1	32896762	Histidine kinase/HSP90-like ATPase; Signal transduction...	0.02	OrthoFinder
XM_002505317.1	MICPUN_62803, 62803	Signal transduction response regulator, receiver domain;...	0.01	OrthoFinder
lcl\|BLLF01000561.1_cds_GFH12981.1_7458	HaLaN_08775, GFH12981	Signal transduction histidine kinase,...	0.02	OrthoFinder
lcl\|BLLF01000788.1_cds_GFH14961.1_9438	HaLaN_11105, GFH14961	Signal transduction histidine kinase,...	0.02	OrthoFinder
lcl\|BLLF01001142.1_cds_GFH17401.1_11878	HaLaN_14031, GFH17401	Signal transduction response regulator, receiver domain;...	0.01	OrthoFinder
lcl\|BLLF01003144.1_cds_GFH26486.1_20963	HaLaN_24644, GFH26486	Histidine kinase/HSP90-like ATPase [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60699.1_4145	PRW60699	Hybrid sensor histidine kinase response regulator	0.02	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58431.1_8010	PRW58431	LOV domain-containing	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006793	phosphorus metabolic process	IEP	Enrichment
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
BP	GO:0016567	protein ubiquitination	IEP	Enrichment
MF	GO:0017069	snRNA binding	IEP	Enrichment
MF	GO:0017070	U6 snRNA binding	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0019538	protein metabolic process	IEP	Enrichment
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0030623	U5 snRNA binding	IEP	Enrichment
BP	GO:0032446	protein modification by small protein conjugation	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0044267	cellular protein metabolic process	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001425	Arc/bac/fun_rhodopsins	86	288
IPR003594	HATPase_C	433	543
IPR003661	HisK_dim/P	322	385
IPR001789	Sig_transdc_resp-reg_receiver	728	845

External Links

No external refs found!

Transcript_contig_89432 (89432)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation