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  5. Cpa|evm.model.tig00000093.151

Cpa|evm.model.tig00000093.151 (tig00000093_g3579.t1)


Aliases : tig00000093_g3579.t1

Description : DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.151
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cz13g08080.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
Cz13g08090.t1 No alias Helicase, C-terminal; GUCT [Interproscan]. 0.02 OrthoFinder
Dusal.0202s00008.1 33191697 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.02 OrthoFinder
Dusal.0888s00003.1 33188564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD23792 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.01 OrthoFinder
OT_04G02790.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.02 OrthoFinder
Sro1581_g283790.1 Contig585.g7354 Dependent RNA helicase 0.02 OrthoFinder
TP04G04540.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
XM_002507844.1 MICPUN_97749, 97749 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
lcl|BLLF01000392.1_cds_GFH11311.1_5788 HaLaN_06792, GFH11311 DEAD box RNA helicase CiRH75 0.02 OrthoFinder
lcl|BLLF01001583.1_cds_GFH20145.1_14622 HaLaN_17222, GFH20145 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
lcl|BLLF01002695.1_cds_GFH25028.1_19505 HaLaN_22919, GFH25028 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59107.1_6866 PRW59107 DEAD-box ATP-dependent RNA helicase 7 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
InterPro domains Description Start Stop
IPR012562 GUCT 349 439
IPR001650 Helicase_C 174 275
IPR011545 DEAD/DEAH_box_helicase_dom 9 131
No external refs found!