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  5. Transcript_contig_89351

Transcript_contig_89351 (89351)


Aliases : 89351

Description : DNA polymerase, Y-family, little finger domain; UmuC domain; DNA polymerase type-Y, HhH motif [Interproscan].


Gene families : OG_01_0000380 (OrthoFinder) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_89351
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cz05g14110.t1 No alias DNA polymerase, Y-family, little finger domain [Interproscan]. 0.02 OrthoFinder
Cz10g08260.t1 No alias Zinc-finger domain of monoamine-oxidase A repressor R1... 0.02 OrthoFinder
Dusal.0390s00003.1 33199531 DNA polymerase, Y-family, little finger domain [Interproscan]. 0.02 OrthoFinder
EOD41045 No alias JmjC domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01006043.1_cds_GFH31894.1_26371 HaLaN_31020, GFH31894 JmjC domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58738.1_7493 PRW58738 DNA polymerase eta isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001126 UmuC 61 280
IPR024728 PolY_HhH_motif 295 324
IPR017961 DNA_pol_Y-fam_little_finger 361 486
No external refs found!