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  5. Cpa|evm.model.tig00000093.137

Cpa|evm.model.tig00000093.137 (tig00000093_g3562.t1)


Aliases : tig00000093_g3562.t1

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component


Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.137
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre01.g016050 30789071, PRP8 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder
Cz07g16060.t1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.05 OrthoFinder
Dusal.0327s00002.1 33200457 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding;... 0.03 OrthoFinder
EOD10350 No alias PRO8NT domain [Interproscan]. 0.02 OrthoFinder
EOD24715 No alias PROCT domain; RNA recognition motif, spliceosomal PrP8;... 0.08 OrthoFinder
OT_11G00220.1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.03 OrthoFinder
PTI_07G01950.1 No alias PROCN domain; Pre-mRNA-processing-splicing factor 8,... 0.02 OrthoFinder
Sro281_g107170.1 Contig3786.g29056 Processing-splicing factor 8 0.02 OrthoFinder
Transcript_contig_53842 53842 PROCT domain; Pre-mRNA-processing-splicing factor 8,... 0.04 OrthoFinder
XM_002509351.1 MICPUN_107163, 107163 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding;... 0.03 OrthoFinder
XM_003061325.1 MicpuC2_48200, 48200 PROCN domain; PROCT domain; Pre-mRNA-processing-splicing... 0.02 OrthoFinder
lcl|BLLF01000102.1_cds_GFH07545.1_2022 HaLaN_02363, GFH07545 MPN domain-containing protein 0.03 OrthoFinder
lcl|BLLF01000717.1_cds_GFH14365.1_8842 HaLaN_10406, GFH14365 MPN domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000717.1_cds_GFH14366.1_8843 HaLaN_10407, GFH14366 MPN domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60964.1_258 PRW60964 Pre-mRNA-processing-splicing factor 8 isoform A 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007051 spindle organization IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0018298 protein-chromophore linkage IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051225 spindle assembly IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR012984 PROCT 1923 1997
IPR019580 Prp8_U6-snRNA-bd 1201 1359
IPR021983 PRP8_domainIV 1519 1733
IPR019581 Prp8_U5-snRNA-bd 969 1102
IPR019582 RRM_spliceosomal_PrP8 763 853
IPR012592 PROCN 207 611
No external refs found!