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Aliases : tig00000880_g5169.t1
Description : Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana
Gene families : OG_01_0003056 (OrthoFinder) Phylogenetic Tree(s): OG0003056_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000880.12 | |
| Cluster | HCCA: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre07.g351750 | 30774969 | Probable rRNA-processing protein EBP2 homolog... | 0.05 | OrthoFinder | |
| Cz10g11190.t1 | No alias | Eukaryotic rRNA processing [Interproscan]. | 0.02 | OrthoFinder | |
| EOD13894 | No alias | Eukaryotic rRNA processing [Interproscan]. | 0.08 | OrthoFinder | |
| OT_12G01740.1 | No alias | Eukaryotic rRNA processing [Interproscan]. | 0.07 | OrthoFinder | |
| PTI_01G11480.1 | No alias | Eukaryotic rRNA processing [Interproscan]. | 0.07 | OrthoFinder | |
| Sro229_g093170.1 | Contig429.g5821 | Processing protein EBP2 | 0.06 | OrthoFinder | |
| TP09G02570.1 | No alias | Eukaryotic rRNA processing [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_78547 | 78547 | Eukaryotic rRNA processing [Interproscan]. | 0.05 | OrthoFinder | |
| lcl|BLLF01000472.1_cds_GFH12146.1_6623 | HaLaN_07781, GFH12146 | Eukaryotic rRNA processing [Interproscan]. | 0.06 | OrthoFinder | |
| lcl|BLLF01002840.1_cds_GFH25532.1_20009 | HaLaN_23512, GFH25532 | Hypothetical protein | 0.03 | OrthoFinder | |
| lcl|LHPG02000016.1_cds_PRW33635.1_3205 | PRW33635 | Putative rRNA-processing EBP2-like protein | 0.03 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8497368.1_1097 | KAA8497368 | Putative rRNA-processing protein EBP2-like | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR008610 | Ebp2 | 55 | 342 |
| No external refs found! |