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  5. Cpa|evm.model.tig00000865.28

Cpa|evm.model.tig00000865.28 (tig00000865_g5079.t1)


Aliases : tig00000865_g5079.t1

Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000865.28
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre17.g744147 30781910 RNA processing.RNA splicing.spliceosome... 0.07 OrthoFinder
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.06 OrthoFinder
Cz09g01060.t1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
Dusal.0019s00002.1 33192520 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
EOD12464 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.07 OrthoFinder
EOD14868 No alias Sec63 domain; Helicase, C-terminal; DEAD/DEAH box... 0.04 OrthoFinder
EOD17849 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
OT_08G02040.1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.04 OrthoFinder
PTI_12G02760.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.04 OrthoFinder
Sro155_g070300.1 Contig395.g5337 DExH-box ATP-dependent RNA helicase DExH17 0.03 OrthoFinder
SymbC1.scaffold291.12 291.12 DEAD/DEAH box helicase domain; Sec63 domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54253 54253 Brr2, N-terminal helicase PWI domain; Helicase,... 0.02 OrthoFinder
Transcript_contig_67850 67850 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.01 OrthoFinder
Vocar.0001s0791.1 32884296 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.04 OrthoFinder
Vocar.0039s0093.1 32897827 Brr2, N-terminal helicase PWI domain; DEAD/DEAH box... 0.02 OrthoFinder
XM_002508192.1 MICPUN_84094, 84094 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
XM_002509189.1 MICPUN_98172, 98172 Helicase, C-terminal; Brr2, N-terminal helicase PWI... 0.04 OrthoFinder
XM_003061475.1 MicpuC2_48293, 48293 Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56130.1_10381 PRW56130 U5 small nuclear ribonucleo 200 kDa helicase-like 0.07 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32955.1_3892 PRW32955 Activating signal cointegrator 1 complex subunit 3 isoform A 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32956.1_3894 PRW32956 Activating signal cointegrator 1 complex subunit 3 isoform B 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497509.1_6462 KAA8497509 DExH-box ATP-dependent RNA helicase DExH17 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009581 detection of external stimulus IEP Enrichment
BP GO:0009582 detection of abiotic stimulus IEP Enrichment
BP GO:0009583 detection of light stimulus IEP Enrichment
BP GO:0009584 detection of visible light IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0018298 protein-chromophore linkage IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 657 780
IPR004179 Sec63-dom 332 630
IPR011545 DEAD/DEAH_box_helicase_dom 2 107
IPR001650 Helicase_C 146 238
No external refs found!