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  5. Transcript_contig_79230

Transcript_contig_79230 (79230)


Aliases : 79230

Description : Cold-shock protein, DNA-binding [Interproscan].


Gene families : OG_01_0000183 (OrthoFinder) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_79230
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cre06.g268600 30779749, NAB1 External stimuli response.temperature.Csd... 0.02 OrthoFinder
Cz05g02010.t1 No alias Cold-shock protein, DNA-binding; RNA recognition motif... 0.02 OrthoFinder
SymbC1.scaffold31298.1 31298.1 Cold-shock protein, DNA-binding [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0155.1 32890859 Cold-shock protein, DNA-binding; RNA recognition motif... 0.01 OrthoFinder
lcl|BLLF01001239.1_cds_GFH18032.1_12509 HaLaN_14767, GFH18032 CSD-domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57393.1_9401 PRW57393 Phosphatidylinositol:ceramide inositolphosphotransferase... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 15 78
No external refs found!