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  5. Transcript_contig_78998

Transcript_contig_78998 (78998)


Aliases : 78998

Description : DNA photolyase, N-terminal; Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan].


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78998
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
Cre01.g030650 30789664 Cryptochrome DASH, chloroplastic/mitochondrial... 0.01 OrthoFinder
Dusal.0203s00017.1 33199258 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.01 OrthoFinder
Sro82_g043740.1 Contig4032.g30965 Cryptochrome-1 0.01 OrthoFinder
XM_003057723.1 MicpuC2_16082, 16082 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.01 OrthoFinder
lcl|BLLF01001533.1_cds_GFH19869.1_14346 HaLaN_16894, GFH19869 Photolyase/cryptochrome alpha/beta domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493824.1_4586 KAA8493824 Cryptochrome DASH 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 9 169
IPR005101 Cryptochr/Photolyase_FAD-bd 291 482
No external refs found!