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  5. Transcript_contig_78987

Transcript_contig_78987 (78987)


Aliases : 78987

Description : BRCA2, OB1 [Interproscan].


Gene families : OG_01_0004187 (OrthoFinder) Phylogenetic Tree(s): OG0004187_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78987
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
OT_11G00640.1 No alias Breast cancer type 2 susceptibility protein, helical... 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0050080 malonyl-CoA decarboxylase activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR015187 BRCA2_OB_1 2 74
No external refs found!