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  5. Transcript_contig_78941

Transcript_contig_78941 (78941)


Aliases : 78941

Description : Clp protease proteolytic subunit /Translocation-enhancing protein TepA [Interproscan].


Gene families : OG_01_0000040 (OrthoFinder) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78941
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Cre14.g619100 30776241, CLPR1 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
OT_09G02930.1 No alias Clp protease proteolytic subunit... 0.01 OrthoFinder
XM_002502598.1 MICPUN_108326, 108326 Clp protease proteolytic subunit... 0.01 OrthoFinder
XM_002507019.1 MICPUN_107465, 107465 Clp protease proteolytic subunit... 0.01 OrthoFinder
XM_002507193.1 MICPUN_71140, 71140 Clp protease proteolytic subunit... 0.01 OrthoFinder
XM_003054761.1 MicpuC2_12936, 12936 Clp protease proteolytic subunit... 0.01 OrthoFinder
XM_003057131.1 MicpuC2_49501, 49501 Clp protease proteolytic subunit... 0.01 OrthoFinder
lcl|BLLF01000415.1_cds_GFH11567.1_6044 HaLaN_07086, GFH11567 ATP-dependent Clp protease proteolytic subunit 0.01 OrthoFinder
lcl|BLLF01000415.1_cds_GFH11568.1_6045 HaLaN_07087, GFH11568 ATP-dependent Clp protease proteolytic subunit 0.01 OrthoFinder
lcl|BLLF01000493.1_cds_GFH12345.1_6822 HaLaN_08009, GFH12345 ATP-dependent Clp protease proteolytic subunit 0.01 OrthoFinder
lcl|BLLF01000889.1_cds_GFH15717.1_10194 HaLaN_11997, GFH15717 ATP-dependent Clp protease proteolytic subunit 0.01 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44912.1_1981 PRW44912 ATP-dependent Clp protease proteolytic subunit 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005747 mitochondrial respiratory chain complex I IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
CC GO:0030964 NADH dehydrogenase complex IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0045271 respiratory chain complex I IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
CC GO:0098803 respiratory chain complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 140 320
No external refs found!