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  5. Transcript_contig_78819

Transcript_contig_78819 (78819)


Aliases : 78819

Description : Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain [Interproscan].


Gene families : OG_01_0000761 (OrthoFinder) Phylogenetic Tree(s): OG0000761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78819
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Cre02.g142352 30785235 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder
Cz11g27130.t1 No alias Aromatic amino acid lyase; Class II Histidinyl-tRNA... 0.01 OrthoFinder
Dusal.0387s00008.1 33202112 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.01 OrthoFinder
EOD37895 No alias Class II Histidinyl-tRNA synthetase (HisRS)-like... 0.02 OrthoFinder
OT_14G01170.1 No alias Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.03 OrthoFinder
Sro390_g132850.1 Contig4620.g34474 Histidine--tRNA ligase 0.01 OrthoFinder
TP17G00350.1 No alias Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.01 OrthoFinder
XM_003063659.1 MicpuC2_36675, 36675 Anticodon-binding; Class II Histidinyl-tRNA synthetase... 0.01 OrthoFinder
lcl|BLLF01002331.1_cds_GFH23674.1_18151 HaLaN_21323, GFH23674 AA_TRNA_LIGASE_II domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59901.1_6743 PRW59901 Histidyl-tRNA synthetase isoform B 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59902.1_6742 PRW59902 Histidyl-tRNA synthetase isoform C 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59903.1_6741 PRW59903 Histidyl-tRNA synthetase isoform A 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494724.1_3254 KAA8494724 Histidine--tRNA ligase, cytoplasmic 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR041715 HisRS-like_core 105 227
No external refs found!