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  5. Transcript_contig_78818

Transcript_contig_78818 (78818)


Aliases : 78818

Description : PHD-finger; SAND domain; PHD-zinc-finger like domain [Interproscan].


Gene families : OG_01_0000051 (OrthoFinder) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78818
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001073.18 tig00001073_g6826.t1 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder
Cz03g13010.t1 No alias PWWP domain; SET domain; AWS domain [Interproscan]. 0.01 OrthoFinder
EOD25975 No alias Pre-SET domain; SET domain [Interproscan]. 0.01 OrthoFinder
EOD37382 No alias SET domain [Interproscan]. 0.01 OrthoFinder
PTI_12G04100.1 No alias SET domain [Interproscan]. 0.01 OrthoFinder
Sro117_g057370.1 Contig3937.g30181 36 and H4 lysine-20 specific 0.01 OrthoFinder
Sro72_g039840.1 Contig1459.g13383 36 and H4 lysine-20 specific 0.01 OrthoFinder
Sro84_g045070.1 Contig220.g2640 36 and H4 lysine-20 specific 0.02 OrthoFinder
TP05G03050.1 No alias Pre-SET CXC domain; SET domain [Interproscan]. 0.02 OrthoFinder
TP06G01570.1 No alias SET domain [Interproscan]. 0.01 OrthoFinder
Vocar.0021s0176.1 32895868 SET domain; AWS domain; PWWP domain [Interproscan]. 0.01 OrthoFinder
Vocar.0044s0031.1 32896567 Zinc finger, CW-type; SET domain; AWS domain [Interproscan]. 0.03 OrthoFinder
XM_002501306.1 MICPUN_57801, 57801 Set domain protein 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60593.1_4707 PRW60593 Histone-lysine N-methyltransferase ASHH2 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57331.1_9054 PRW57331 Microtubule-associated futsch isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
InterPro domains Description Start Stop
IPR000770 SAND_dom 162 243
No external refs found!