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  5. Transcript_contig_78738

Transcript_contig_78738 (78738)


Aliases : 78738

Description : Hypothetical protein


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78738
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001095.9 tig00001095_g7025.t1 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 No description available 0.04 OrthoFinder
Cpa|evm.model.tig00020723.8 tig00020723_g13427.t1 No description available 0.04 OrthoFinder
Cre09.g407200 30780595 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.06 OrthoFinder
Cz14g22040.t1 No alias Amine oxidase [Interproscan]. 0.08 OrthoFinder
Dusal.0111s00019.1 33199801 Amine oxidase [Interproscan]. 0.03 OrthoFinder
EOD31741 No alias Phytoene desaturase [Ensembl]. 0.01 OrthoFinder
EOD40572 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
OT_06G02870.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
PTI_15G03080.1 No alias Amine oxidase [Interproscan]. 0.01 OrthoFinder
Sro1559_g282470.1 Contig1268.g11842 Prolycopene isomerase 2, chloroplastic 0.01 OrthoFinder
Sro1649_g288630.1 Contig3529.g27273 Prolycopene isomerase, chloroplastic 0.06 OrthoFinder
Sro175_g076960.1 Contig1856.g16212 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
Sro2485_g328970.1 Contig802.g8984 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
TP07G04730.1 No alias NAD(P)-binding Rossmann-like domain [Interproscan]. 0.01 OrthoFinder
Vocar.0018s0001.1 32898723 Amine oxidase [Interproscan]. 0.02 OrthoFinder
XM_002507271.1 MICPUN_55458, 55458 Amine oxidase [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000127.1_cds_GFH07954.1_2431 HaLaN_02839, GFH07954 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000280.1_cds_GFH10007.1_4484 HaLaN_05249, GFH10007 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44628.1_2401 PRW44628 Carotene isomerase 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33144.1_3623 PRW33144 Carotene isomerase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009411 response to UV IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!