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  5. Transcript_contig_78716

Transcript_contig_78716 (78716)


Aliases : 78716

Description : Ataxin 2, SM domain; LsmAD domain [Interproscan].


Gene families : OG_01_0004365 (OrthoFinder) Phylogenetic Tree(s): OG0004365_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78716
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Vocar.0001s0464.1 32885251 LsmAD domain; Ataxin-2, C-terminal; Ataxin 2, SM domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR009604 LsmAD_domain 245 316
IPR025852 SM_dom_ATX 87 166
No external refs found!