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  5. Cpa|evm.model.tig00000857.20

Cpa|evm.model.tig00000857.20 (tig00000857_g4946.t1)


Aliases : tig00000857_g4946.t1

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SR30/34 splicing factor


Gene families : OG_01_0002944 (OrthoFinder) Phylogenetic Tree(s): OG0002944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000857.20
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Cre06.g278239 30779801 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder
Cz06g08020.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz13g16010.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0293.1 32891004 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 164
IPR000504 RRM_dom 15 57
No external refs found!